Factsheet for VIT_08s0007g02910.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0157g00020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11540.1	VIT_18s0157g00020.t01	AT1G22770.1	15155885

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72262	Soybean	cytosol	84.35	83.08
Solyc09g010180.2.1	Tomato	extracellular	83.92	82.38
PGSC0003DMT400023083	Potato	cytosol	83.48	81.95
AT3G11540.1	Thale cress	cytosol	81.95	81.95
CDY08515	Canola	cytosol	80.74	81.28
CDY01033	Canola	cytosol	80.53	80.53
Bra034832.1-P	Field mustard	cytosol	80.31	80.31
KRH67954	Soybean	cytosol	80.63	80.2
GSMUA_Achr3P22610_001	Banana	cytosol	79.65	79.3
KRH32780	Soybean	cytosol	83.15	78.92
KRG96211	Soybean	plastid	80.53	75.8
EES14080	Sorghum	cytosol	75.05	74.97
Zm00001d031938_P001	Maize	plastid	74.62	74.86
Os08t0559300-01	Rice	cytosol	75.71	74.65
TraesCS6D01G095600.1	Wheat	cytosol	75.16	73.01
TraesCS6B01G136300.1	Wheat	cytosol, plastid	74.62	72.71
TraesCS6A01G107700.1	Wheat	cytosol	74.4	72.19
CDX73870	Canola	cytosol	70.79	71.89
Bra001408.1-P	Field mustard	cytosol	70.79	71.89
HORVU6Hr1G019280.3	Barley	cytosol	74.84	70.66
CDY00739	Canola	cytosol	78.99	67.54
VIT_14s0036g00890.t01	Wine grape	cytosol	4.7	28.67
VIT_04s0043g00760.t01	Wine grape	cytosol	24.29	22.52
VIT_18s0001g13570.t01	Wine grape	cytosol	7.77	8.89

Protein Annotations

KEGG:00514+2.4.1.255	Gene3D:1.25.40.10	EntrezGene:100259643	wikigene:100259643	MapMan:18.1.2.2.1	Gene3D:3.40.50.11380
Gene3D:3.40.50.2000	ProteinID:CBI30334	ProteinID:CBI30334.3	UniProt:D7TJA8	EMBL:FN595991	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009719	GO:GO:0009736	GO:GO:0009938	GO:GO:0009987	GO:GO:2000377	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100259643	wikigene:LOC100259643	InterPro:OGT/SEC/SPY_C	PFAM:PF00515
PFAM:PF13181	PFAM:PF13374	PFAM:PF13432	PFAM:PF13844	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR44835	SMART:SM00028	SMART:SM00671	SUPFAM:SSF48452	InterPro:Sel1-like	TIGR:TC54496
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0001983F37	ArrayExpress:VIT_08s0007g02910
EnsemblPlantsGene:VIT_08s0007g02910	EnsemblPlants:VIT_08s0007g02910.t01	unigene:Vvi.13671	unigene:Vvi.3358	RefSeq:XP_002281883	RefSeq:XP_002281883.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:16964510..16983300

Molecular Weight (calculated)

101884.0 Da

IEP (calculated)

6.122

GRAVY (calculated)

-0.234

Length

914 amino acids

Sequence
(BLAST)

001: MAWTEKEVGN GRDREPVGGN GFSKVSQTSS STSSTSPGCL PKKFEGKDAL SYANILRSRN KFADALAMYE NILEKDNGNV EAHIGKGICL QMQNMGRLAF
101: ESFSEAIRQD PQNLCALTHL GILYKDEGRL LEAAESYDKA LRIDSSYKPA AECLAIVLTD LGTSLKLAGN TQEGIQKYYE ALKIDPHYAP AYYNLGVVYS
201: EMMQYDTALS CYEKAALERP MYAEAYCNMG VIFKNRGDLE SAITCYERCL AVSPNFEIAK NNMAIALTDL GTKVKLEGDI NQGVAYYKKA LYYNWHYADA
301: MYNLGVAYGE MLKFDMAIVF YELAFHFNPH CAEACNNLGV IYKDRDNLDK AVECYQLALS IKPNFSQSLN NLGVVYTVQG KMDAAASMIE KAIVANPTYA
401: EAYNNLGVLY RDAGNISMAI EAYEQCLKID PDSRNAGQNR LLAMNYINEG NDDKLFEAHR DWGRRFMRLY PQYTSWDNPK DPERPLVVGY VSPDYFTHSV
501: SYFIEAPLVN HDYANYKVVV YSAVVKADAK TIRFRDKVLK RGGVWRDIYG IDEKKVASMV REDKVDILVE LTGHTANNKL GMMACRPAPV QVTWIGYPNT
601: TGLPTIDYRI TDSLADLPDT SQKHVEELVR LPECFLCYMP SPEAGPVSPT PALSNGFITF GSFNNLAKIT PKVLQVWARI LCAVPNSRLV VKCKPFCCDS
701: VRQRFLSTLE QLGLESLRVD LLPLILLNHD HMQAYALMDI SLDTFPYAGT TTTCESLFMG VPCVTMAGSV HAHNVGVSLL NKVGLGRLVA KTEDEYVQLA
801: LQLASDITAL SNLRMSLRDL MSKSPVCNGP NFALALESTY RSMWRRYCKG DVPSLRRMEI LQQENSEEPV VKLPEPTKIT NSRDDSSGSI KTNGLNQVPS
901: SMLKHSTSEE NGVS

Best Arabidopsis Sequence Match ( AT3G11540.1 )
(BLAST)

001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS

Arabidopsis Description

SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.