Factsheet for VIT_04s0043g00760.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
mitochondrion 3
cytosol 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0036g00890.t01	Wine grape	cytosol	13.59	89.33
KRH34180	Soybean	cytosol	83.87	83.7
KRG92600	Soybean	cytosol	83.77	83.6
Solyc09g097830.2.1	Tomato	cytosol	80.22	80.3
PGSC0003DMT400040741	Potato	cytosol	79.31	79.88
AT3G04240.1	Thale cress	cytosol	79.11	79.84
CDY29989	Canola	cytosol	78.7	79.51
CDY21133	Canola	cytosol, mitochondrion	78.6	79.49
Bra040144.1-P	Field mustard	cytosol, mitochondrion	78.5	79.38
GSMUA_Achr3P17280_001	Banana	cytosol	80.02	78.74
HORVU2Hr1G067320.4	Barley	cytosol	76.27	78.5
TraesCS2A01G275800.1	Wheat	cytosol	77.28	77.28
TraesCS2B01G293500.1	Wheat	cytosol	77.18	77.18
TraesCS2D01G274800.1	Wheat	endoplasmic reticulum	77.08	77.08
Os01t0915400-00	Rice	plastid	12.17	76.92
OQU84950	Sorghum	cytosol	77.89	75.96
Zm00001d016506_P003	Maize	cytosol	77.59	72.65
Os02t0489550-00	Rice	endoplasmic reticulum, golgi	47.77	72.02
GSMUA_Achr1P17080_001	Banana	cytosol	79.92	71.64
KRH38067	Soybean	cytosol	5.78	71.25
Zm00001d031337_P001	Maize	cytosol	8.62	69.11
Zm00001d015678_P001	Maize	extracellular	10.65	69.08
Zm00001d050343_P001	Maize	cytosol	12.17	54.55
Zm00001d003691_P002	Maize	cytosol	9.23	42.33
VIT_08s0007g02910.t01	Wine grape	cytosol	22.52	24.29
VIT_18s0001g13570.t01	Wine grape	cytosol	7.51	9.26

Protein Annotations

KEGG:00514+2.4.1.255	Gene3D:1.25.40.10	EntrezGene:100244912	wikigene:100244912	MapMan:18.1.2.2.2	Gene3D:3.40.50.11380
Gene3D:3.40.50.2000	EMBL:AM464984	ProteinID:CAN74770	ProteinID:CAN74770.1	ProteinID:CBI28662	ProteinID:CBI28662.3
UniProt:D7TDT9	EMBL:FN595763	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100244912	wikigene:LOC100244912	InterPro:OGT/SEC/SPY_C	PFAM:PF00515
PFAM:PF13176	PFAM:PF13374	PFAM:PF13414	PFAM:PF13844	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR44998	SMART:SM00028	SMART:SM00671	SUPFAM:SSF48452	InterPro:Sel1-like	TIGR:TC54381
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI00019830C4	ArrayExpress:VIT_04s0043g00760
EnsemblPlantsGene:VIT_04s0043g00760	EnsemblPlants:VIT_04s0043g00760.t01	unigene:Vvi.16367	RefSeq:XP_002270163	RefSeq:XP_002270163.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:14943633..14962525

Molecular Weight (calculated)

111147.0 Da

IEP (calculated)

6.741

GRAVY (calculated)

-0.200

Length

986 amino acids

Sequence
(BLAST)

001: MMISLQNDAR NHHQLSQQLV GGMSRVSLNS DHRDEAPSVY VVKPEASLSL KPFKTEAHEV DEDMLLALAH QSYKAGNYKQ SLDHCNAVYE RNSLRTDNLL
101: LMGAIYYQLH DFDMCIARNE EALQIDPRFA ECYGNMANAW KEKGNVDLAI RYYLIAIELR PNFCDAWSNL ASAYMRKGRL NEAAQCCRQA LAINPLLVDA
201: HSNLGNFMKA QGLIQEAYSC YIEALRIQPS FAIAWSNLAG LFMESGDLTR ALQYYKEAVK LKPTFADAYL NLGNVYKALG MPQEAIVCYQ RALQTRPEYA
301: MAYGNMAGTY YEQGQMDMAI VHYKQAIECD SGFLEAYNNL GNALKDVGRI DEAIQCYHQC LALQPNHPQA LTNLGNIYME WNMVAAAATY YKATLAVTTG
401: LSAPFSNLAI IYKQQGNYAD AISCYNEVLR IDPLAADGLV NRGNTFKEIG RVSEAIQDYI HAITIRPTMA EAHANLASAY KDSGHVEAAV KSYKQALVLR
501: PDFPEATCNL LHTLQCVCSW EDREKMFIEV EGIIRRQIKM SVLPSVQPFH AIAYPIDPLL ALDISRKYAA HCSLIASRYA LPSFNHPNPV PVKSEGGSGR
601: LRIGYLSSDF GNHPLSHLMG SVFGMHNREN VEVFCYALSP NDSTEWRQRI QSEAEHFIDV SAMSSDMIAK LINEDKIQIL INLNGYTKGA RNEIFAMQPA
701: PIQVSYMGFP GTTGASYIDY LVTDEFVSPL CYAHIYSEKL VHLPHCYFVN DYKQKNRDVL DPNCQHKRSD YGLPEDKFIF ACFNQLYKMD PEIFNTWCNI
801: LKRVPNSALW LLRFPAAGEM RLRSYAVAQG LQPDRIIFTD VAMKHEHIRR SALADLFLDT PLCNAHTTGT DILWAGLPMV TLPLEKMATR VAGSLCLATG
901: LGEEMIVSSM KEYEEKAVSL AMNRPKLQAL TNKLKAVRMS CPLFDTARWV RNLERAYFKM WNVHCSGSRP QHFKVAENDV DFPCDR

Best Arabidopsis Sequence Match ( AT3G04240.1 )
(BLAST)

001: MISSKNGAAM ISRPVFLSDR VDEVFSRKLD LSVSSSSSSS LLQQFNKTHE GDDDARLALA HQLYKGGDFK QALEHSNMVY QRNPLRTDNL LLIGAIYYQL
101: QEYDMCIARN EEALRIQPQF AECYGNMANA WKEKGDTDRA IRYYLIAIEL RPNFADAWSN LASAYMRKGR LSEATQCCQQ ALSLNPLLVD AHSNLGNLMK
201: AQGLIHEAYS CYLEAVRIQP TFAIAWSNLA GLFMESGDLN RALQYYKEAV KLKPAFPDAY LNLGNVYKAL GRPTEAIMCY QHALQMRPNS AMAFGNIASI
301: YYEQGQLDLA IRHYKQALSR DPRFLEAYNN LGNALKDIGR VDEAVRCYNQ CLALQPNHPQ AMANLGNIYM EWNMMGPASS LFKATLAVTT GLSAPFNNLA
401: IIYKQQGNYS DAISCYNEVL RIDPLAADAL VNRGNTYKEI GRVTEAIQDY MHAINFRPTM AEAHANLASA YKDSGHVEAA ITSYKQALLL RPDFPEATCN
501: LLHTLQCVCC WEDRSKMFAE VESIIRRQIN MSVLPSVQPF HAIAYPIDPI LALEISRKYA AHCSIIASRF GLPPFTHPAG LPVKREGGFK RLRIGYVSSD
601: FGNHPLSHLM GSVFGMHNRE NVEVFCYALS ANDNTEWRQR IQSEAEHFLD VSAMSSDAIA KIINQDKIQI LINLNGYTKG ARNEIFAMQP APIQVSYMGF
701: PGTTGATYID YLVTDEFVSP LQYAHIYSEK LVHLPHCYFV NDYKQKNQDV LDPNSKPKRS DYGLPEDKFI FACFNQLYKM DPEIVNTWCN ILKRVPNSAL
801: WLLRFPAAGE MRFRTYAAAQ GVQPDQIIFT DVAMKSEHIR RSVLADVILD TPLCNGHTTG TDVLWAGVPM ITLPLEKMAT RVAGSLCLAT GLGHGMIVNS
901: LEEYEEKAVS LALNKPKLQA LTKELRASRL TCPLFDTMRW VKNLERSYFK MWNLHCSGQQ PQHFKVLEND LEFPHDR

Arabidopsis Description

SECProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.