CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
golgi 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34180	Soybean	cytosol	98.28	98.28
VIT_04s0043g00760.t01	Wine grape	cytosol	83.6	83.77
VIT_14s0036g00890.t01	Wine grape	cytosol	12.55	82.67
AT3G04240.1	Thale cress	cytosol	80.77	81.68
KRH38067	Soybean	cytosol	6.58	81.25
CDY21133	Canola	cytosol, mitochondrion	80.16	81.23
CDY29989	Canola	cytosol	79.96	80.94
Bra040144.1-P	Field mustard	cytosol, mitochondrion	79.86	80.92
PGSC0003DMT400040741	Potato	cytosol	80.06	80.8
Solyc09g097830.2.1	Tomato	cytosol	80.47	80.71
HORVU2Hr1G067320.4	Barley	cytosol	75.91	78.29
GSMUA_Achr3P17280_001	Banana	cytosol	78.54	77.45
TraesCS2A01G275800.1	Wheat	cytosol	76.32	76.47
TraesCS2D01G274800.1	Wheat	endoplasmic reticulum	76.11	76.27
TraesCS2B01G293500.1	Wheat	cytosol	76.11	76.27
OQU84950	Sorghum	cytosol	77.53	75.77
Os01t0915400-00	Rice	plastid	11.84	75.0
Zm00001d016506_P003	Maize	cytosol	77.33	72.55
Os02t0489550-00	Rice	endoplasmic reticulum, golgi	47.57	71.87
GSMUA_Achr1P17080_001	Banana	cytosol	78.74	70.73
Zm00001d015678_P001	Maize	extracellular	10.32	67.11
Zm00001d031337_P001	Maize	cytosol	8.2	65.85
Zm00001d050343_P001	Maize	cytosol	12.15	54.55
Zm00001d003691_P002	Maize	cytosol	9.01	41.4
KRH38138	Soybean	cytosol	4.96	25.93
KRH67954	Soybean	cytosol	23.28	25.03
KRH72262	Soybean	cytosol	23.48	25.0
KRG96211	Soybean	plastid	23.08	23.48
KRH32780	Soybean	cytosol	22.87	23.47
KRH33574	Soybean	cytosol	8.1	9.98
KRG90336	Soybean	nucleus	7.79	9.6

Protein Annotations

KEGG:00514+2.4.1.255	Gene3D:1.25.40.10	EntrezGene:100806661	MapMan:18.1.2.2.2	Gene3D:3.40.50.11380	Gene3D:3.40.50.2000
EMBL:ACUP02012763	EnsemblPlantsGene:GLYMA_20G221000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1NIK8
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRG92600	ProteinID:KRG92600	ProteinID:KRG92600.1
InterPro:OGT/SEC/SPY_C	PFAM:PF00515	PFAM:PF13176	PFAM:PF13414	PFAM:PF13844	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR44998	SMART:SM00028	SMART:SM00671	SUPFAM:SSF48452	InterPro:Sel1-like
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI00023DCC03	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:45586131..45595463

Molecular Weight (calculated)

111876.0 Da

IEP (calculated)

6.869

GRAVY (calculated)

-0.273

Length

988 amino acids

Sequence
(BLAST)

001: MISVQGDLHR HHHHYHHQPQ LPGSADTSRQ QFTADRVEPF SVKQEPASLT LLPLRGHDSS EVDEDVHLSL AHQMYKTGNY KQALEHSNTV YERNPLRTDN
101: LLLLGAVYYQ LHDFDMCVAK NEEALRIEPH FAECYGNMAN AWKEKGNIDL AIRYYLIAIE LRPNFADAWS NLASAYMRKG RLTEAAQCCR QALAINPLMV
201: DAHSNLGNLM KAQGLVQEAY SCYLEALRIQ PTFAIAWSNL AGLFMESGDF NRALQYYKEA VKLKPSFPDA YLNLGNVYKA LGMPQEAIAC YQHALQTRPN
301: YGMAYGNLAS IYYEQGQLDM AILHYKQAVA CDPRFLEAYN NLGNALKDVG RVEEAIQCYN QCLTLQPNHP QALTNLGNIY MEWNMVAAAA QYYKATLNVT
401: TGLSAPYNNL AIIYKQQGNY VDAISCYNEV LRIDPLAADG LVNRGNTYKE IGRVSDAIQD YIRAIAVRPT MAEAHANLAS AYKDSGHVEA AVKSYKQALI
501: LRPDFPEATC NLLHTYQCVC CWEDRDKMFK EVEAIIRRQI NMSVIPSVQP FHAIAYPLDP MLALEISRKY AAHCSVIASR FSLPPFNHPA PIPIKREGGY
601: ERLRVGYVSS DFGNHPLSHL MGSVFGMHNR KNVEVFCYAL SVNDGTEWRQ RIQSEAEHFV DVSAMSSDAI AKMINEDKIH ILVNLNGYTK GARNEIFAMQ
701: PAPIQVSYMG FPGTTGATYI DYLVTDEFVS PLRYANIYSE KIVHLPHCYF VNDYKQKNQD VLDPNCPHKR SDYGLPEDKF IFACFNQLYK MDPEIFNTWC
801: NILKRVPNSA LWLLRFPAAG EMRLRAYAAA QGVQPDQIIF TDVAMKNEHI RRSSLADLFL DSPLCNAHTT GTDILWAGLP MVTLPLEKMA TRVAGSLCLA
901: TGLGEEMIVS SMEEYEDRAV SLALNRPKLQ ALTNKLKAVR MTCPLFDTAR WVRNLERSYF KMWNLHCSGQ RPQHFKVTEN DLECPYDR

Best Arabidopsis Sequence Match ( AT3G04240.1 )
(BLAST)

001: MISSKNGAAM ISRPVFLSDR VDEVFSRKLD LSVSSSSSSS LLQQFNKTHE GDDDARLALA HQLYKGGDFK QALEHSNMVY QRNPLRTDNL LLIGAIYYQL
101: QEYDMCIARN EEALRIQPQF AECYGNMANA WKEKGDTDRA IRYYLIAIEL RPNFADAWSN LASAYMRKGR LSEATQCCQQ ALSLNPLLVD AHSNLGNLMK
201: AQGLIHEAYS CYLEAVRIQP TFAIAWSNLA GLFMESGDLN RALQYYKEAV KLKPAFPDAY LNLGNVYKAL GRPTEAIMCY QHALQMRPNS AMAFGNIASI
301: YYEQGQLDLA IRHYKQALSR DPRFLEAYNN LGNALKDIGR VDEAVRCYNQ CLALQPNHPQ AMANLGNIYM EWNMMGPASS LFKATLAVTT GLSAPFNNLA
401: IIYKQQGNYS DAISCYNEVL RIDPLAADAL VNRGNTYKEI GRVTEAIQDY MHAINFRPTM AEAHANLASA YKDSGHVEAA ITSYKQALLL RPDFPEATCN
501: LLHTLQCVCC WEDRSKMFAE VESIIRRQIN MSVLPSVQPF HAIAYPIDPI LALEISRKYA AHCSIIASRF GLPPFTHPAG LPVKREGGFK RLRIGYVSSD
601: FGNHPLSHLM GSVFGMHNRE NVEVFCYALS ANDNTEWRQR IQSEAEHFLD VSAMSSDAIA KIINQDKIQI LINLNGYTKG ARNEIFAMQP APIQVSYMGF
701: PGTTGATYID YLVTDEFVSP LQYAHIYSEK LVHLPHCYFV NDYKQKNQDV LDPNSKPKRS DYGLPEDKFI FACFNQLYKM DPEIVNTWCN ILKRVPNSAL
801: WLLRFPAAGE MRFRTYAAAQ GVQPDQIIFT DVAMKSEHIR RSVLADVILD TPLCNGHTTG TDVLWAGVPM ITLPLEKMAT RVAGSLCLAT GLGHGMIVNS
901: LEEYEEKAVS LALNKPKLQA LTKELRASRL TCPLFDTMRW VKNLERSYFK MWNLHCSGQQ PQHFKVLEND LEFPHDR

Arabidopsis Description

SECProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.