Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057711 | Potato | cytosol | 95.91 | 95.59 |
| VIT_00s0181g00040.t01 | Wine grape | nucleus | 76.15 | 76.67 |
| KRH49941 | Soybean | cytosol | 72.06 | 73.18 |
| KRH41935 | Soybean | cytosol | 71.72 | 72.71 |
| VIT_05s0020g00220.t01 | Wine grape | cytosol | 26.58 | 65.55 |
| Solyc06g008440.1.1 | Tomato | extracellular | 6.98 | 64.06 |
| VIT_05s0020g04830.t01 | Wine grape | cytosol | 25.38 | 62.6 |
| Solyc09g074520.2.1 | Tomato | cytosol | 53.32 | 53.87 |
| Solyc06g008470.1.1 | Tomato | extracellular | 5.11 | 52.63 |
| Solyc06g008810.2.1 | Tomato | cytosol | 34.75 | 48.46 |
| Solyc06g008460.1.1 | Tomato | extracellular | 19.42 | 48.1 |
| Solyc04g074980.2.1 | Tomato | cytosol | 47.53 | 44.78 |
| Solyc06g008780.1.1 | Tomato | extracellular | 35.43 | 41.94 |
| Solyc06g007840.2.1 | Tomato | extracellular, plastid | 5.79 | 41.46 |
| Solyc05g009260.1.1 | Tomato | extracellular | 5.45 | 39.51 |
| Solyc06g007830.1.1 | Tomato | endoplasmic reticulum, extracellular | 7.16 | 36.84 |
| Solyc06g084490.1.1 | Tomato | plastid | 11.41 | 31.9 |
| Solyc05g052620.2.1 | Tomato | cytosol | 31.35 | 30.51 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.80.10.10 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | UniProt:K4B9E3 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF1 | SMART:SM00256 |
| SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc02g079190.2 | EnsemblPlants:Solyc02g079190.2.1 | UniParc:UPI0002768869 |
Description
No Description!
Coordinates
chr2:+:43802276..43807013
Molecular Weight (calculated)
66116.6 Da
IEP (calculated)
6.919
GRAVY (calculated)
-0.154
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPSLKKPRE SVDLSKMSEL SQSAFPDEVL EKVLSLVQSH KDRNSASLVC KDWYNAERWT RTKLFIGNCY SVTPEIVARR FPKIKSVTLK GKPRFSDFNL
101: VPENWGADIQ AWLDVFAKVY PFLEELRLKR MAVTDESLEF LAKSFLGFKA LSLLSCDGFS TDGIGSIAAH CKNLTELDIQ ENGMDDISGS WLSCFPDDFT
201: SLEVLNFASM NTEISKDALE RLVGRCKSLR VLKVNKNVTL PQLQRLLVRA PQLMELGTGC FLPDQLTSRQ YEELESAFSN CKHLHSLSGF WEANRRYLPS
301: LYAACASLTF LNLSYETIRS GELSKLLLHC PNLRRLWVLD TVNDKGLEAV GTSCPLLEEL RVFPADPFEE DMDHGVTESG FIAVSAGCPK LQYVLYFCWQ
401: MTNAAVATIV HNCPNFTHFR LCIMSPGQPD YLTNEPMDEA FGAVVKTCKK LQRLSVSGRL TDLTFEYIGK YAKNLETLSV AFSGGTDWGM QCVLDGCSKL
501: RKLEIRDSPF GNAALLSGMG KYESMRCLWM SACRVTMNGC RILARERPRL NVEVIKDEHS DDYADKLYVY RSVAGPRRDA PPFVVTL
101: VPENWGADIQ AWLDVFAKVY PFLEELRLKR MAVTDESLEF LAKSFLGFKA LSLLSCDGFS TDGIGSIAAH CKNLTELDIQ ENGMDDISGS WLSCFPDDFT
201: SLEVLNFASM NTEISKDALE RLVGRCKSLR VLKVNKNVTL PQLQRLLVRA PQLMELGTGC FLPDQLTSRQ YEELESAFSN CKHLHSLSGF WEANRRYLPS
301: LYAACASLTF LNLSYETIRS GELSKLLLHC PNLRRLWVLD TVNDKGLEAV GTSCPLLEEL RVFPADPFEE DMDHGVTESG FIAVSAGCPK LQYVLYFCWQ
401: MTNAAVATIV HNCPNFTHFR LCIMSPGQPD YLTNEPMDEA FGAVVKTCKK LQRLSVSGRL TDLTFEYIGK YAKNLETLSV AFSGGTDWGM QCVLDGCSKL
501: RKLEIRDSPF GNAALLSGMG KYESMRCLWM SACRVTMNGC RILARERPRL NVEVIKDEHS DDYADKLYVY RSVAGPRRDA PPFVVTL
001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
Arabidopsis Description
TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.