Factsheet for TraesCS5A01G306400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2A01G506500.1
TraesCS2B01G195600.1
TraesCS2B01G534800.1
TraesCS2D01G176800.1
TraesCS2D01G507200.1
TraesCS4B01G364700.1
TraesCS5A01G204900.1
TraesCS5A01G212800.1
TraesCS5A01G533000.1
TraesCS5A01G533100.1
TraesCS5B01G203400.2
TraesCS5B01G211000.1
TraesCS5D01G211200.2
TraesCS5D01G219300.2
TraesCSU01G139000.1
TraesCSU01G139100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	TraesCS2A01G169300.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2B01G195600.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2D01G176800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5A01G212800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5B01G211000.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5D01G219300.2	AT1G19180.1	18547396
AT1G32640.1	TraesCS4B01G364700.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G204900.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5B01G203400.2	AT1G48500.1	19309455
AT1G32640.1	TraesCS5D01G211200.2	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS4B01G364700.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G204900.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5B01G203400.2	AT3G17860.1	17637675
AT1G32640.1	TraesCS5D01G211200.2	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS2A01G506500.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2B01G534800.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2D01G507200.1	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G306500.1	Wheat	nucleus	87.44	69.39
TraesCS5A01G306200.1	Wheat	nucleus	84.75	67.74
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	47.98	65.24
TraesCS1A01G369200.1	Wheat	nucleus	49.33	55.56
TraesCS5A01G306700.1	Wheat	peroxisome	62.33	50.73
TraesCS5A01G306600.1	Wheat	nucleus	59.64	48.36
Zm00001d006150_P001	Maize	nucleus	59.19	45.36
EER99201	Sorghum	nucleus	59.64	44.93
TraesCS2A01G448500.1	Wheat	nucleus	50.67	44.14
Zm00001d021164_P001	Maize	nucleus	57.4	44.14
Bra017527.1-P	Field mustard	nucleus	25.11	24.78
Bra013263.1-P	Field mustard	nucleus	26.01	21.4
CDY70013	Canola	nucleus	21.97	19.44
Bra024992.1-P	Field mustard	nucleus	22.87	18.82
VIT_02s0025g02610.t01	Wine grape	nucleus	29.15	18.01
Solyc10g009290.1.1	Tomato	nucleus	34.08	16.85
PGSC0003DMT400014089	Potato	nucleus	28.7	16.67
PGSC0003DMT400028057	Potato	nucleus	28.7	16.45
KRH06400	Soybean	nucleus	34.08	16.31
KRH47834	Soybean	nucleus	33.18	15.95
Solyc01g096370.2.1	Tomato	nucleus	31.84	15.78
Solyc10g009270.2.1	Tomato	nucleus	27.8	15.78
PGSC0003DMT400014097	Potato	nucleus	32.29	15.75
PGSC0003DMT400047220	Potato	nucleus	31.84	15.71
AT4G00870.1	Thale cress	nucleus, plastid	29.6	15.6
VIT_15s0048g02820.t01	Wine grape	nucleus	33.63	15.09
Solyc08g083170.1.1	Tomato	extracellular	25.56	14.73
PGSC0003DMT400031899	Potato	plastid	27.8	14.39
TraesCS5A01G555300.1	Wheat	nucleus	15.7	14.29
Bra024998.1-P	Field mustard	nucleus	33.63	12.93
TraesCS3A01G252900.1	Wheat	nucleus	26.46	12.85
Bra017520.1-P	Field mustard	nucleus	28.7	12.85
AT5G46760.1	Thale cress	nucleus	34.08	12.84
Bra010178.1-P	Field mustard	nucleus	34.53	12.83
TraesCS4A01G292800.1	Wheat	nucleus	21.08	12.77
AT4G17880.1	Thale cress	nucleus	33.63	12.73
AT5G46830.1	Thale cress	nucleus	29.15	12.72
TraesCS5A01G505100.1	Wheat	nucleus	17.04	12.71
AT1G32640.1	Thale cress	nucleus	34.98	12.52
Bra017523.1-P	Field mustard	nucleus	28.25	12.43
Solyc08g008600.2.1	Tomato	nucleus	25.11	12.39
TraesCS3A01G019000.1	Wheat	nucleus	17.49	12.23
PGSC0003DMT400002963	Potato	nucleus	32.74	12.21
Bra024993.1-P	Field mustard	nucleus	20.63	12.2
VIT_02s0012g01320.t01	Wine grape	nucleus	35.87	12.07
TraesCS4A01G408700.1	Wheat	nucleus	14.35	11.85
PGSC0003DMT400015017	Potato	nucleus	24.22	11.84
TraesCS4A01G292700.1	Wheat	nucleus	18.83	11.7
TraesCS4A01G257900.2	Wheat	nucleus	19.73	11.67
TraesCS3A01G019100.1	Wheat	nucleus	16.59	11.64
TraesCS5A01G555200.1	Wheat	nucleus	16.14	11.58
TraesCS7A01G558700.1	Wheat	nucleus	16.59	11.53
KRH74418	Soybean	nucleus	32.29	11.21
KRH75613	Soybean	nucleus	31.84	11.15
TraesCS4A01G354100.1	Wheat	nucleus	16.14	11.08
Solyc08g076930.1.1	Tomato	nucleus	34.08	11.03
KRH45440	Soybean	nucleus	32.29	11.01
PGSC0003DMT400045204	Potato	nucleus	34.08	10.95
TraesCS4A01G408800.1	Wheat	nucleus	18.83	10.94
TraesCS4A01G059100.1	Wheat	nucleus	16.14	10.84
Solyc08g005050.2.1	Tomato	nucleus	22.42	10.78
TraesCS1A01G193200.1	Wheat	nucleus	31.84	10.25
TraesCS3A01G158600.1	Wheat	nucleus	28.25	10.23
KRH39540	Soybean	nucleus	32.74	9.99
TraesCS5A01G014800.1	Wheat	nucleus	17.49	9.92
TraesCS4A01G028900.1	Wheat	nucleus	25.56	9.55
TraesCS5A01G489500.1	Wheat	nucleus	18.39	7.19
TraesCS5A01G558500.1	Wheat	nucleus	18.39	7.01
TraesCS2A01G409600.2	Wheat	nucleus, plastid	17.04	6.81
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	18.83	6.71
Bra013264.1-P	Field mustard	nucleus	8.52	6.4
TraesCS2A01G409400.1	Wheat	nucleus	15.7	6.16
CDY70012	Canola	nucleus	4.93	4.12

Protein Annotations

EnsemblPlants:TraesCS5A01G306400.1	EnsemblPlantsGene:TraesCS5A01G306400	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF68	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr5A:-:516664063..516664734

Molecular Weight (calculated)

23785.7 Da

IEP (calculated)

7.566

GRAVY (calculated)

-0.521

Length

223 amino acids

Sequence
(BLAST)

001: MDDELLSPCS SCFPVSPPFG QFEHQHHQFI EFAPARSRSN GFSETSSVPA KSEDAGDLWP AGSLLSPDSD LSELPAPSLP ASTESTPRPA AKRRGRKPGP
101: RPEGPTVSHV EAERQRRDKL NRRFCDLRAA VPTVSRMDKA SLLADAAAYI AELRAGVARL EDESKQAAAA RWDTRSASLG GGGGSIQHFP AGDETLEVRM
201: VGRDAAAVRV TTAAGSALTL RRA

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.