Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047220 | Potato | nucleus | 93.56 | 93.14 |
| Solyc10g009290.1.1 | Tomato | nucleus | 53.56 | 53.44 |
| Solyc10g009270.2.1 | Tomato | nucleus | 43.56 | 49.87 |
| KRH47834 | Soybean | nucleus | 48.44 | 46.98 |
| KRH06400 | Soybean | nucleus | 48.0 | 46.35 |
| Solyc08g083170.1.1 | Tomato | extracellular | 35.78 | 41.6 |
| Solyc08g008600.2.1 | Tomato | nucleus | 37.56 | 37.39 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 20.22 | 35.55 |
| HORVU5Hr1G080040.1 | Barley | nucleus | 21.11 | 35.45 |
| TraesCSU01G222600.1 | Wheat | nucleus | 19.33 | 35.37 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 19.33 | 35.37 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 15.56 | 35.35 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 21.78 | 35.13 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 21.56 | 34.77 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 21.56 | 34.77 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 19.78 | 34.77 |
| Zm00001d031717_P001 | Maize | nucleus | 19.56 | 34.65 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 20.89 | 34.43 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 20.89 | 34.43 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 21.33 | 34.41 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 20.22 | 34.34 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 20.67 | 34.07 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 20.67 | 33.94 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 21.11 | 33.93 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 21.11 | 33.81 |
| HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 12.22 | 33.54 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 20.44 | 33.45 |
| EER99201 | Sorghum | nucleus | 22.0 | 33.45 |
| Zm00001d006150_P001 | Maize | nucleus | 21.56 | 33.33 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 18.89 | 33.2 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 20.22 | 33.09 |
| Zm00001d052728_P001 | Maize | nucleus | 20.22 | 33.09 |
| OQU75588 | Sorghum | nucleus | 19.33 | 33.08 |
| OQU80776 | Sorghum | nucleus | 19.33 | 33.08 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 17.56 | 33.05 |
| Os09t0519100-00 | Rice | nucleus | 19.33 | 32.95 |
| Zm00001d021164_P001 | Maize | nucleus | 21.11 | 32.76 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 20.0 | 32.61 |
| HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 15.11 | 32.38 |
| Os08t0543700-00 | Rice | nucleus, peroxisome, plastid | 18.67 | 31.94 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 15.78 | 31.84 |
| KXG25462 | Sorghum | nucleus | 19.56 | 31.65 |
| OQU80778 | Sorghum | nucleus | 18.89 | 31.48 |
| OQU86344 | Sorghum | nucleus | 17.33 | 30.47 |
| HORVU5Hr1G079900.1 | Barley | cytosol | 18.22 | 30.37 |
| OQU80777 | Sorghum | nucleus | 18.89 | 30.36 |
| Solyc08g005050.2.1 | Tomato | nucleus | 29.33 | 28.45 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 16.89 | 27.24 |
| Solyc08g076930.1.1 | Tomato | nucleus | 38.89 | 25.4 |
| Solyc06g083980.1.1 | Tomato | nucleus | 26.67 | 25.16 |
| HORVU1Hr1G050560.1 | Barley | nucleus | 36.44 | 23.98 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 36.44 | 23.67 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 36.44 | 23.6 |
| Os10t0575000-01 | Rice | nucleus | 36.0 | 23.18 |
| KXG39194 | Sorghum | nucleus | 36.0 | 22.91 |
| Zm00001d047017_P001 | Maize | nucleus | 35.78 | 22.9 |
| Zm00001d030028_P001 | Maize | nucleus | 35.56 | 22.7 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 34.67 | 22.51 |
| Solyc05g050560.1.1 | Tomato | nucleus | 28.22 | 21.93 |
| Solyc01g096050.2.1 | Tomato | nucleus | 29.33 | 21.82 |
| Solyc01g106460.2.1 | Tomato | nucleus | 11.33 | 20.99 |
| Solyc06g064590.1.1 | Tomato | nucleus | 11.11 | 17.79 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 9.11 | 17.52 |
| Solyc09g065100.1.1 | Tomato | nucleus | 25.11 | 16.62 |
| Solyc08g081140.2.1 | Tomato | nucleus | 23.11 | 16.61 |
| Solyc02g091820.1.1 | Tomato | nucleus | 11.78 | 16.26 |
| Solyc06g064580.1.1 | Tomato | nucleus | 10.67 | 15.79 |
| Solyc02g091800.2.1 | Tomato | nucleus | 11.33 | 14.7 |
| Solyc02g091810.1.1 | Tomato | nucleus | 9.78 | 13.84 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:K4B025 | InterPro:MYC/MYB_N |
| PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF40 | SMART:SM00353 |
| SUPFAM:SSF47459 | EnsemblPlantsGene:Solyc01g096370.2 | EnsemblPlants:Solyc01g096370.2.1 | UniParc:UPI00027678A5 | InterPro:bHLH_dom | SEG:seg |
Description
No Description!
Coordinates
chr1:+:87450178..87452057
Molecular Weight (calculated)
49499.5 Da
IEP (calculated)
5.450
GRAVY (calculated)
-0.348
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLAVSSSP MAVAPPPVDV NQVPLGLQQM LQYVVKSQPE WWAYAIFWQT SNDDEGKNFL AWGDGYFQGD GVVINNKGGG GSSSSLKSQA QSERKKVIKG
101: IQALMDGNGD TDLVDDGDVT DTEWFYVMSL ARSFSAGDGS VTGKAFGSDD FLWITGPDQF QLHYSCERAK EAQIHGIQTL VSIPTSNGVF ELGSTQLIKQ
201: NLSLVQQVKS LFLCCPPIQF LEKTISFADI GLVTGLQQDD NDYKLRENSR KPHPVVAKKR GRKPKGGEED AHMAALNHVE AERQRREKLN HRFYALRSVV
301: PNVSRMDKAS LLSDAVSYIN QLKAKVDELE LQLIDHTKKP KIVTESSSAD NQSATTSSDD QVIKAANPTA APEVEVKIVG TDAMIRVQSE NVDYPSAKLM
401: IALQNLQMQV HHASISSVNH LVLHDVVVRV PQGLSTEDEL RTALLTSYDL
101: IQALMDGNGD TDLVDDGDVT DTEWFYVMSL ARSFSAGDGS VTGKAFGSDD FLWITGPDQF QLHYSCERAK EAQIHGIQTL VSIPTSNGVF ELGSTQLIKQ
201: NLSLVQQVKS LFLCCPPIQF LEKTISFADI GLVTGLQQDD NDYKLRENSR KPHPVVAKKR GRKPKGGEED AHMAALNHVE AERQRREKLN HRFYALRSVV
301: PNVSRMDKAS LLSDAVSYIN QLKAKVDELE LQLIDHTKKP KIVTESSSAD NQSATTSSDD QVIKAANPTA APEVEVKIVG TDAMIRVQSE NVDYPSAKLM
401: IALQNLQMQV HHASISSVNH LVLHDVVVRV PQGLSTEDEL RTALLTSYDL
001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL
Arabidopsis Description
BHLH14Transcription factor bHLH14 [Source:UniProtKB/Swiss-Prot;Acc:O23090]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.