Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g106460.2.1 | Tomato | nucleus | 28.83 | 33.33 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 22.42 | 31.34 |
| Solyc06g064580.1.1 | Tomato | nucleus | 33.1 | 30.59 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 31.32 | 27.16 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 25.62 | 27.07 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 31.32 | 26.35 |
| KRH42021 | Soybean | nucleus | 18.15 | 26.15 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 27.4 | 26.1 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 21.71 | 26.07 |
| Solyc02g091820.1.1 | Tomato | nucleus | 29.89 | 25.77 |
| Solyc02g091810.1.1 | Tomato | nucleus | 28.83 | 25.47 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 20.64 | 25.44 |
| CDY13737 | Canola | nucleus | 26.69 | 25.42 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 21.0 | 25.21 |
| Bra039924.1-P | Field mustard | nucleus | 27.76 | 24.92 |
| AT4G37850.1 | Thale cress | nucleus | 28.47 | 24.39 |
| CDX89511 | Canola | nucleus | 27.76 | 24.3 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 28.11 | 24.16 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 28.47 | 24.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.4 | 23.91 |
| CDX76899 | Canola | nucleus | 27.05 | 23.53 |
| AT2G22750.3 | Thale cress | nucleus | 27.76 | 23.42 |
| CDX69336 | Canola | nucleus | 28.11 | 23.37 |
| Solyc02g091800.2.1 | Tomato | nucleus | 28.83 | 23.34 |
| KXG37671 | Sorghum | nucleus | 29.54 | 23.31 |
| Bra030210.1-P | Field mustard | nucleus | 26.69 | 23.29 |
| CDY25628 | Canola | nucleus | 26.69 | 23.29 |
| Bra011790.1-P | Field mustard | nucleus | 27.76 | 23.21 |
| CDX75679 | Canola | nucleus | 27.76 | 23.21 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 25.62 | 23.0 |
| Zm00001d033848_P004 | Maize | nucleus | 29.54 | 22.8 |
| CDY72199 | Canola | nucleus | 27.05 | 22.75 |
| CDY49678 | Canola | nucleus | 27.05 | 22.75 |
| Bra010617.1-P | Field mustard | nucleus | 27.05 | 22.75 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 15.66 | 22.34 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 27.05 | 22.29 |
| Os03t0725800-01 | Rice | nucleus | 28.47 | 22.28 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 29.18 | 21.93 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 28.83 | 21.6 |
| Zm00001d013370_P001 | Maize | plastid | 28.47 | 21.45 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 28.11 | 20.95 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 24.56 | 20.78 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 24.56 | 20.23 |
| Solyc08g083170.1.1 | Tomato | extracellular | 17.44 | 12.66 |
| Solyc08g008600.2.1 | Tomato | nucleus | 19.93 | 12.39 |
| Solyc10g009290.1.1 | Tomato | nucleus | 19.22 | 11.97 |
| Solyc10g009270.2.1 | Tomato | nucleus | 16.01 | 11.45 |
| Solyc01g096370.2.1 | Tomato | nucleus | 17.79 | 11.11 |
| Solyc08g076930.1.1 | Tomato | nucleus | 22.06 | 9.0 |
| Solyc09g065100.1.1 | Tomato | nucleus | 21.35 | 8.82 |
| Solyc06g083980.1.1 | Tomato | nucleus | 14.95 | 8.81 |
| Solyc08g005050.2.1 | Tomato | nucleus | 14.23 | 8.62 |
| Solyc08g081140.2.1 | Tomato | nucleus | 17.44 | 7.83 |
| Solyc01g096050.2.1 | Tomato | nucleus | 16.37 | 7.6 |
| Solyc05g050560.1.1 | Tomato | nucleus | 14.95 | 7.25 |
Protein Annotations
| EnsemblPlants:Solyc06g064590.1.1 | EnsemblPlantsGene:Solyc06g064590.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF75 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002766EFB | UniProt:K4C789 | MapMan:15.5.32 | MapMan:25.4.1.7 | : |
Description
No Description!
Coordinates
chr6:+:40250466..40254760
Molecular Weight (calculated)
31810.4 Da
IEP (calculated)
4.635
GRAVY (calculated)
-0.627
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNYYDSFQ GMEYSGNYNY EDESFFEFKP NISQGIYDLS SAYNTNIEEK SGQKSISSNN SSSNSGGFLI SFSSNQEEDI GAMISSENSC QESFLLGENN
101: NNNNNNNNVM YKRSPQQAQD HVIAERKRRE KMGDLFISLS KIVPGLKKLD KSSILGDTIE YMKELQEQVK LLEESKKNTS SSLEHNDSNK EQVLGSNKIK
201: VRIMDKNVLI NIHCNKQDGM LGRLLVQMEQ LHLSVHDMRI MPFGPTNLEI SLLAQMEDGC CINVEDIVKA IQINILDLVN N
101: NNNNNNNNVM YKRSPQQAQD HVIAERKRRE KMGDLFISLS KIVPGLKKLD KSSILGDTIE YMKELQEQVK LLEESKKNTS SSLEHNDSNK EQVLGSNKIK
201: VRIMDKNVLI NIHCNKQDGM LGRLLVQMEQ LHLSVHDMRI MPFGPTNLEI SLLAQMEDGC CINVEDIVKA IQINILDLVN N
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.