Factsheet for Bra039924.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13737	Canola	nucleus	93.29	98.98
CDX76899	Canola	nucleus	95.21	92.26
Bra030210.1-P	Field mustard	nucleus	81.15	78.88
AT2G22750.3	Thale cress	nucleus	80.19	75.38
Bra010617.1-P	Field mustard	nucleus	57.51	53.89
Bra011790.1-P	Field mustard	nucleus	57.83	53.87
GSMUA_Achr8P05170_001	Banana	nucleus	29.39	45.77
GSMUA_Achr2P08590_001	Banana	nucleus	33.55	39.47
GSMUA_Achr7P00800_001	Banana	cytosol	29.39	39.32
GSMUA_Achr3P26180_001	Banana	nucleus	35.14	37.29
GSMUA_Achr8P26460_001	Banana	nucleus	38.98	36.75
Bra013128.1-P	Field mustard	nucleus	30.99	36.33
GSMUA_AchrUn_...	Banana	nucleus	37.06	36.02
GSMUA_Achr7P27600_001	Banana	nucleus	38.02	35.63
PGSC0003DMT400033757	Potato	nucleus	23.0	34.29
GSMUA_Achr3P30620_001	Banana	nucleus	35.46	34.26
GSMUA_Achr4P23070_001	Banana	nucleus	33.87	33.87
GSMUA_Achr4P03160_001	Banana	nucleus	34.82	33.33
VIT_00s0927g00010.t01	Wine grape	nucleus	23.64	32.46
Bra039926.1-P	Field mustard	nucleus	29.71	32.07
KXG37671	Sorghum	nucleus	36.42	32.02
Bra030208.1-P	Field mustard	nucleus	30.67	31.58
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	23.0	30.77
Os03t0725800-01	Rice	nucleus	35.14	30.64
Zm00001d033848_P004	Maize	nucleus	35.46	30.49
Bra039927.1-P	Field mustard	nucleus	30.03	29.75
KRH42021	Soybean	nucleus	18.53	29.74
Solyc02g091810.1.1	Tomato	nucleus	30.03	29.56
Bra030207.1-P	Field mustard	nucleus	30.35	29.14
Solyc02g091820.1.1	Tomato	nucleus	30.03	28.83
PGSC0003DMT400078698	Potato	nucleus	19.17	28.71
Zm00001d013370_P001	Maize	plastid	33.87	28.42
PGSC0003DMT400078699	Potato	nucleus	29.07	28.17
HORVU4Hr1G009440.2	Barley	nucleus	30.67	28.15
Solyc06g064580.1.1	Tomato	nucleus	27.16	27.96
Solyc06g064590.1.1	Tomato	nucleus	24.92	27.76
TraesCS4B01G056600.2	Wheat	nucleus	32.59	27.27
TraesCS4D01G056900.2	Wheat	nucleus	32.59	27.2
VIT_00s0384g00020.t01	Wine grape	nucleus	16.93	26.9
TraesCS4A01G257900.2	Wheat	nucleus	32.27	26.79
GSMUA_Achr4P14580_001	Banana	nucleus	25.56	24.1
GSMUA_Achr4P03170_001	Banana	nucleus	25.24	23.17
Bra017527.1-P	Field mustard	nucleus	16.61	23.01
Bra013263.1-P	Field mustard	nucleus	17.25	19.93
Bra024992.1-P	Field mustard	nucleus	15.65	18.08
Bra039279.1-P	Field mustard	nucleus	18.21	12.42
Bra024998.1-P	Field mustard	nucleus	22.36	12.07
Bra010178.1-P	Field mustard	nucleus	23.0	12.0
Bra004532.1-P	Field mustard	nucleus	17.57	11.32
Bra017523.1-P	Field mustard	nucleus	18.21	11.24
Bra017520.1-P	Field mustard	nucleus	17.57	11.04
Bra033273.1-P	Field mustard	nucleus	20.45	10.96
Bra038458.1-P	Field mustard	nucleus	15.65	10.86
Bra012720.1-P	Field mustard	nucleus	15.34	10.53
Bra024993.1-P	Field mustard	nucleus	12.46	10.34
Bra037887.1-P	Field mustard	nucleus	14.7	9.26
Bra025508.1-P	Field mustard	nucleus	17.89	8.9
Bra027653.1-P	Field mustard	nucleus	16.93	8.89
Bra027796.1-P	Field mustard	nucleus	16.93	8.75
Bra000970.1-P	Field mustard	nucleus	14.06	6.73
Bra013264.1-P	Field mustard	nucleus	5.43	5.72
Bra037343.1-P	Field mustard	cytosol	12.78	5.63

Protein Annotations

EnsemblPlants:Bra039924.1	EnsemblPlants:Bra039924.1-P	EnsemblPlantsGene:Bra039924	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR23042	PANTHER:PTHR23042:SF100	PFAM:PF00010	PFscan:PS50888	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002542EF3	UniProt:M4FFQ0	MapMan:15.5.32	MapMan:25.4.1.7	:	:

Description

AT2G22750 (E=1e-123) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA09:-:31835327..31836868

Molecular Weight (calculated)

34978.0 Da

IEP (calculated)

8.467

GRAVY (calculated)

-0.461

Length

313 amino acids

Sequence
(BLAST)

001: MATTMNDIEE YNIIHQHHMN SLLGDFPQSL SSLHDTSTCY NFGASCNDYL VEEEPSKILK TTHESPNLHL YPFANSTSPH PQPSSRFLSF EKTGLKVMNH
101: KSPNLIFSPK EKVGSEDLIR RGTKKAQPLA RSPSNAQEHI LAERKRREKL TQRFVALSAL IPGLKKMDKA SVLGDAIKHI KYLQESVSEY EKQKKGRTLE
201: SVVLVNKSQL VLDEHHKLSP SFSDGNRDYS SSNLPEIEVR VSGKDVLIKI ICEKQKGNLI KIMGEIEKLG LSITNSSLLP FGPTSDISII AQKTCDFDMK
301: VEDVVKSLSC GLS

Best Arabidopsis Sequence Match ( AT2G22750.3 )
(BLAST)

001: MATAMNVFST KWSSELDIEE YSIIHQFHMN SLVGDVPQSL SSLDDTTTCY NLDASCNKSL VEERPSKILK TTHISPNLHP FSSSNPPPPK HQPSSRILSF
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.