Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013263.1-P | Field mustard | nucleus | 77.88 | 64.94 |
| CDY35179 | Canola | nucleus | 100.0 | 40.21 |
| CDY03195 | Canola | nucleus | 92.48 | 38.35 |
| Bra024992.1-P | Field mustard | nucleus | 42.48 | 35.42 |
| Bra024998.1-P | Field mustard | nucleus | 89.82 | 35.0 |
| AT5G46760.1 | Thale cress | nucleus | 89.82 | 34.29 |
| HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 26.99 | 29.05 |
| Zm00001d031717_P001 | Maize | nucleus | 32.3 | 28.74 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 32.74 | 27.92 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 33.19 | 27.47 |
| TraesCSU01G222600.1 | Wheat | nucleus | 29.65 | 27.24 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 29.65 | 27.24 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 32.74 | 27.11 |
| HORVU5Hr1G079900.1 | Barley | cytosol | 32.3 | 27.04 |
| OQU80776 | Sorghum | nucleus | 31.42 | 27.0 |
| OQU75588 | Sorghum | nucleus | 31.42 | 27.0 |
| Zm00001d052728_P001 | Maize | nucleus | 32.74 | 26.91 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 30.09 | 26.56 |
| Os09t0519100-00 | Rice | nucleus | 30.97 | 26.52 |
| OQU80778 | Sorghum | nucleus | 31.42 | 26.3 |
| HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 19.03 | 26.22 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 29.65 | 26.17 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 29.65 | 26.17 |
| KXG25462 | Sorghum | nucleus | 31.86 | 25.9 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 31.42 | 25.82 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 31.86 | 25.81 |
| Os08t0543700-00 | Rice | nucleus, peroxisome, plastid | 29.65 | 25.48 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 30.97 | 25.45 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 31.42 | 25.45 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 31.42 | 25.45 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 31.42 | 25.45 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 22.12 | 25.25 |
| Solyc08g005050.2.1 | Tomato | nucleus | 51.77 | 25.22 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 30.53 | 25.18 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 24.78 | 25.11 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 26.55 | 25.1 |
| PGSC0003DMT400002963 | Potato | nucleus | 66.37 | 25.08 |
| HORVU5Hr1G080040.1 | Barley | nucleus | 29.65 | 25.0 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 30.53 | 25.0 |
| OQU80777 | Sorghum | nucleus | 30.97 | 25.0 |
| OQU86344 | Sorghum | nucleus | 28.32 | 25.0 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 30.97 | 24.91 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 30.09 | 24.91 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 30.53 | 24.64 |
| Zm00001d006150_P001 | Maize | nucleus | 31.42 | 24.4 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 29.65 | 24.01 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 69.91 | 23.83 |
| EER99201 | Sorghum | nucleus | 30.97 | 23.65 |
| KRH75613 | Soybean | nucleus | 66.37 | 23.55 |
| Bra017523.1-P | Field mustard | nucleus | 52.65 | 23.47 |
| Zm00001d021164_P001 | Maize | nucleus | 30.09 | 23.45 |
| Bra017520.1-P | Field mustard | nucleus | 50.88 | 23.09 |
| Bra010178.1-P | Field mustard | nucleus | 61.06 | 23.0 |
| KRH74418 | Soybean | nucleus | 64.16 | 22.59 |
| KRH45440 | Soybean | nucleus | 65.04 | 22.48 |
| Solyc08g076930.1.1 | Tomato | nucleus | 67.26 | 22.06 |
| PGSC0003DMT400045204 | Potato | nucleus | 67.26 | 21.9 |
| KRH39540 | Soybean | nucleus | 64.16 | 19.84 |
| Os10t0575000-01 | Rice | nucleus | 61.06 | 19.74 |
| Zm00001d030028_P001 | Maize | nucleus | 60.62 | 19.43 |
| Zm00001d047017_P001 | Maize | nucleus | 59.73 | 19.2 |
| HORVU1Hr1G050560.1 | Barley | nucleus | 57.96 | 19.15 |
| KXG39194 | Sorghum | nucleus | 59.73 | 19.09 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 58.41 | 19.05 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 58.41 | 19.05 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 58.41 | 18.99 |
| Bra013128.1-P | Field mustard | nucleus | 21.24 | 17.98 |
| Bra039279.1-P | Field mustard | nucleus | 35.84 | 17.65 |
| Bra004532.1-P | Field mustard | nucleus | 36.28 | 16.87 |
| Bra038458.1-P | Field mustard | nucleus | 33.63 | 16.85 |
| Bra012720.1-P | Field mustard | nucleus | 33.63 | 16.67 |
| Bra039924.1-P | Field mustard | nucleus | 23.01 | 16.61 |
| Bra010617.1-P | Field mustard | nucleus | 23.01 | 15.57 |
| Bra030210.1-P | Field mustard | nucleus | 22.12 | 15.53 |
| Bra011790.1-P | Field mustard | nucleus | 23.01 | 15.48 |
| Bra033273.1-P | Field mustard | nucleus | 38.5 | 14.9 |
| Bra024993.1-P | Field mustard | nucleus | 24.78 | 14.85 |
| Bra039926.1-P | Field mustard | nucleus | 18.58 | 14.48 |
| Bra030208.1-P | Field mustard | nucleus | 19.47 | 14.47 |
| Bra039927.1-P | Field mustard | nucleus | 19.03 | 13.61 |
| Bra030207.1-P | Field mustard | nucleus | 19.47 | 13.5 |
| Bra037887.1-P | Field mustard | nucleus | 23.45 | 10.66 |
| Bra027796.1-P | Field mustard | nucleus | 22.57 | 8.42 |
| Bra025508.1-P | Field mustard | nucleus | 22.57 | 8.11 |
| Bra027653.1-P | Field mustard | nucleus | 21.24 | 8.05 |
| Bra000970.1-P | Field mustard | nucleus | 17.7 | 6.12 |
| Bra037343.1-P | Field mustard | cytosol | 17.26 | 5.49 |
| Bra013264.1-P | Field mustard | nucleus | 0.44 | 0.34 |
Protein Annotations
| EnsemblPlants:Bra017527.1 | EnsemblPlants:Bra017527.1-P | EnsemblPlantsGene:Bra017527 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF43 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000254244E | UniProt:M4DLZ6 | MapMan:15.5.32 | : |
Description
AT5G46760 (E=2e-095) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA09:-:16103104..16103784
Molecular Weight (calculated)
25463.6 Da
IEP (calculated)
9.668
GRAVY (calculated)
-0.662
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSFSTVVRS AAKSVDSDHS DIEASVVKEA IIVEPEKKPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL
101: KTKLQQAETD KEEVQKQLDR MSKEGGGSRR AKERKSNLDS ASSVEMEIDV KIIGWDVMIR VQCGKKNHPG ARFMEALKEL DLEVNHASLS MVNDLMIQQA
201: TVKMGSQFFN HDQLKAALML KVGEDS
101: KTKLQQAETD KEEVQKQLDR MSKEGGGSRR AKERKSNLDS ASSVEMEIDV KIIGWDVMIR VQCGKKNHPG ARFMEALKEL DLEVNHASLS MVNDLMIQQA
201: TVKMGSQFFN HDQLKAALML KVGEDS
001: MNGTTSSINF LTSDDDASAA AMEAFIGTNH HSSLFPPPPQ QPPQPQFNED TLQQRLQALI ESAGENWTYA IFWQISHDFD SSTGDNTVIL GWGDGYYKGE
101: EDKEKKKNNT NTAEQEHRKR VIRELNSLIS GGIGVSDESN DEEVTDTEWF FLVSMTQSFV NGVGLPGESF LNSRVIWLSG SGALTGSGCE RAGQGQIYGL
201: KTMVCIATQN GVVELGSSEV ISQSSDLMHK VNNLFNFNNG GGNNGVEASS WGFNLNPDQG ENDPALWISE PTNTGIESPA RVNNGNNSNS NSKSDSHQIS
301: KLEKNDISSV ENQNRQSSCL VEKDLTFQGG LLKSNETLSF CGNESSKKRT SVSKGSNNDE GMLSFSTVVR SAANDSDHSD LEASVVKEAI VVEPPEKKPR
401: KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL KSKLQQAESD KEEIQKKLDG MSKEGNNGKG CGSRAKERKS
501: SNQDSTASSI EMEIDVKIIG WDVMIRVQCG KKDHPGARFM EALKELDLEV NHASLSVVND LMIQQATVKM GSQFFNHDQL KVALMTKVGE NY
101: EDKEKKKNNT NTAEQEHRKR VIRELNSLIS GGIGVSDESN DEEVTDTEWF FLVSMTQSFV NGVGLPGESF LNSRVIWLSG SGALTGSGCE RAGQGQIYGL
201: KTMVCIATQN GVVELGSSEV ISQSSDLMHK VNNLFNFNNG GGNNGVEASS WGFNLNPDQG ENDPALWISE PTNTGIESPA RVNNGNNSNS NSKSDSHQIS
301: KLEKNDISSV ENQNRQSSCL VEKDLTFQGG LLKSNETLSF CGNESSKKRT SVSKGSNNDE GMLSFSTVVR SAANDSDHSD LEASVVKEAI VVEPPEKKPR
401: KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL KSKLQQAESD KEEIQKKLDG MSKEGNNGKG CGSRAKERKS
501: SNQDSTASSI EMEIDVKIIG WDVMIRVQCG KKDHPGARFM EALKELDLEV NHASLSVVND LMIQQATVKM GSQFFNHDQL KVALMTKVGE NY
Arabidopsis Description
MYC3Transcription factor MYC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIP9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.