Factsheet for Bra025508.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39747	Canola	nucleus	88.55	99.64
AT5G41315.2	Thale cress	nucleus	85.85	83.72
CDY45357	Canola	cytosol, golgi, nucleus	24.96	82.63
Bra027653.1-P	Field mustard	nucleus	68.2	71.98
Bra027796.1-P	Field mustard	nucleus	69.0	71.62
VIT_02s0025g03450.t01	Wine grape	nucleus	51.19	51.27
GSMUA_Achr11P...	Banana	nucleus	36.73	49.04
Os04t0557500-00	Rice	mitochondrion, plasma membrane	13.51	47.22
Solyc08g081140.2.1	Tomato	nucleus	45.15	45.37
GSMUA_Achr8P11430_001	Banana	nucleus	37.52	43.22
GSMUA_Achr11P...	Banana	nucleus	37.2	42.39
GSMUA_Achr11P...	Banana	nucleus	38.47	40.81
PGSC0003DMT400032140	Potato	nucleus	22.42	39.17
GSMUA_Achr5P20600_001	Banana	nucleus	36.57	39.12
HORVU2Hr1G096810.5	Barley	nucleus	32.59	36.54
TraesCS2A01G409600.2	Wheat	nucleus, plastid	32.27	36.38
TraesCS2D01G406900.1	Wheat	nucleus	32.59	36.16
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	31.64	35.6
TraesCS2A01G409400.1	Wheat	nucleus	32.11	35.56
Os01t0577300-00	Rice	cytosol	6.84	35.25
TraesCS2B01G428000.1	Wheat	nucleus	31.32	34.38
TraesCS4B01G397400.1	Wheat	nucleus	30.68	34.22
TraesCSU01G116000.1	Wheat	nucleus	24.64	33.99
TraesCSU01G029400.1	Wheat	nucleus	30.84	33.92
OQU82120	Sorghum	nucleus	31.48	33.67
Os04t0557800-00	Rice	mitochondrion	30.68	33.62
TraesCS2D01G406800.1	Wheat	plastid	24.8	33.55
TraesCS5A01G489500.1	Wheat	nucleus	29.89	32.98
OQU81560	Sorghum	nucleus	30.68	32.77
OQU82117	Sorghum	nucleus	30.52	32.54
Zm00001d000236_P001	Maize	nucleus, plastid	28.62	32.32
Zm00001d026147_P002	Maize	nucleus	31.64	32.31
TraesCS5A01G558500.1	Wheat	nucleus	29.73	31.97
TraesCS4D01G224600.1	Wheat	nucleus	28.3	31.96
TraesCS2D01G575600.3	Wheat	nucleus, plastid	29.57	31.58
TraesCS4B01G397800.1	Wheat	nucleus	24.32	30.0
Bra037887.1-P	Field mustard	nucleus	23.53	29.78
Bra000970.1-P	Field mustard	nucleus	30.37	29.2
TraesCS4B01G397300.1	Wheat	nucleus	17.01	26.29
Bra037343.1-P	Field mustard	cytosol	29.09	25.74
TraesCSU01G237100.1	Wheat	nucleus	14.63	25.07
TraesCSU01G228400.1	Wheat	nucleus	14.63	25.07
OQU82119	Sorghum	nucleus	20.99	24.18
Os01t0576100-00	Rice	nucleus	11.92	23.89
Bra017527.1-P	Field mustard	nucleus	8.11	22.57
Bra024993.1-P	Field mustard	nucleus	13.51	22.55
Bra039279.1-P	Field mustard	nucleus	15.58	21.35
Bra004532.1-P	Field mustard	nucleus	16.06	20.78
Bra012720.1-P	Field mustard	nucleus	14.94	20.61
Os11t0258700-00	Rice	mitochondrion	15.74	20.5
Bra017520.1-P	Field mustard	nucleus	16.06	20.28
Bra013264.1-P	Field mustard	nucleus	9.54	20.2
Bra038458.1-P	Field mustard	nucleus	14.47	20.18
Bra024992.1-P	Field mustard	nucleus	8.59	19.93
Bra017523.1-P	Field mustard	nucleus	15.9	19.72
Bra024998.1-P	Field mustard	nucleus	18.12	19.66
Bra013128.1-P	Field mustard	nucleus	8.27	19.48
Bra030208.1-P	Field mustard	nucleus	8.9	18.42
Bra033273.1-P	Field mustard	nucleus	16.69	17.98
Bra039924.1-P	Field mustard	nucleus	8.9	17.89
Bra010178.1-P	Field mustard	nucleus	17.01	17.83
Bra013263.1-P	Field mustard	nucleus	7.63	17.71
Bra039926.1-P	Field mustard	nucleus	7.63	16.55
Bra030210.1-P	Field mustard	nucleus	8.27	16.15
Bra011790.1-P	Field mustard	nucleus	8.59	16.07
Bra010617.1-P	Field mustard	nucleus	8.27	15.57
Bra039927.1-P	Field mustard	nucleus	7.63	15.19
Bra030207.1-P	Field mustard	nucleus	7.79	15.03

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra025508	EnsemblPlants:Bra025508.1	EnsemblPlants:Bra025508.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4E9Q2	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF38	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002545298	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT5G41315 (E=2e-303) GL3, MYC6.2 | GL3 (GLABROUS 3); protein binding / transcription factor

Coordinates

chrA04:+:8267010..8271312

Molecular Weight (calculated)

69733.5 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.394

Length

629 amino acids

Sequence
(BLAST)

001: MVTGQNRTSV PENLKKQLAV SIRSIQWSYA IFWSVSASQP GVLEWGDGYY NGDIKTRKTI QASEIKADQL GLRRSEQLRE LFESLSIAES SSTGTAVGSQ
101: VSRRASAAAL SPEDLADTEW YYLVCMSFVF KIGEGMPGRT FANGEPIWLC NAGTADSKVF SRSLLAKSAS VNTVICFPFL GGVVEIGTTE HIAEDMNVIQ
201: CVKKSFLEAP DSNASILQPI SSDYHIDNVL DPQHILGDEI YAPMFGTRPF QATSPTRTTN GFDPEHDQLA EDHDSFMAEG INSQVQSWQH MDDELSNCVH
301: QSLNSSDCVS QTFAEAGARR VSCGARKGRI QRLGHLQEQQ KNVKMLSFDP RNDDVHYQSV ISTIFKTSHQ LILGPQFGNC DKRSSFTRWK KPSPSSSGTA
401: SIVAPSQGML KKIIFEVPRV HQKEKLMLDS PVAGDETANH AVSEKKRREK LNERFLILRS IIPSVNKSDK VSILDDTIEY LQELERRVQE LESCRESTDT
501: ETRGTIAAKR KKPYDAGERT SANCTNNEIG YVKRTHVGEA EPAETGLTDN LRIRSFGNEV VIELRCVWRE GVLLEIMDVI SNLHLDSHSV QSSTGDGLLC
601: LTVSCKHKGS KIATPGMIKE ALQKVAWIC

Best Arabidopsis Sequence Match ( AT5G41315.1 )
(BLAST)

001: MATGQNRTTV PENLKKHLAV SVRNIQWSYG IFWSVSASQS GVLEWGDGYY NGDIKTRKTI QASEIKADQL GLRRSEQLSE LYESLSVAES SSSGVAAGSQ
101: VTRRASAAAL SPEDLADTEW YYLVCMSFVF NIGEGMPGRT FANGEPIWLC NAHTADSKVF SRSLLAKSAA VKTVVCFPFL GGVVEIGTTE HITEDMNVIQ
201: CVKTSFLEAP DPYATILPAR SDYHIDNVLD PQQILGDEIY APMFSTEPFP TASPSRTTNG FDQEHEQVAD DHDSFMTERI TGGASQVQSW QLMDDELSNC
301: VHQSLNSSDC VSQTFVEGAA GRVAYGARKS RVQRLGQIQE QQRNVKTLSF DPRNDDVHYQ SVISTIFKTN HQLILGPQFR NCDKQSSFTR WKKSSSSSSG
401: TATVTAPSQG MLKKIIFDVP RVHQKEKLML DSPEARDETG NHAVLEKKRR EKLNERFMTL RKIIPSINKI DKVSILDDTI EYLQELERRV QELESCREST
501: DTETRGTMTM KRKKPCDAGE RTSANCANNE TGNGKKVSVN NVGEAEPADT GFTGLTDNLR IGSFGNEVVI ELRCAWREGV LLEIMDVISD LHLDSHSVQS
601: STGDGLLCLT VNCKHKGSKI ATPGMIKEAL QRVAWIC

Arabidopsis Description

GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.