Factsheet for Os04t0557200-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 1
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0127450-00
Os01t0576100-00
Os01t0577300-00
Os01t0695900-01
Os02t0682500-01
Os04t0557200-01
Os04t0557500-00
Os04t0557800-00
Os11t0258700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	Os01t0576100-00	AT1G63650.1	12917293
AT1G63650.1	Os01t0577300-00	AT1G63650.1	12917293
AT1G63650.1	Os04t0557200-01	AT1G63650.1	12917293
AT1G63650.1	Os04t0557500-00	AT1G63650.1	12917293
AT1G63650.1	Os04t0557800-00	AT1G63650.1	12917293
AT1G63650.1	Os11t0258700-00	AT1G63650.1	12917293
AT1G63650.1	Os01t0127450-00	AT1G71030.1	15361138
AT1G63650.1	Os01t0695900-01	AT3G13540.1	15361138
AT1G63650.1	Os02t0682500-01	AT5G24520.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0557500-00	Rice	mitochondrion, plasma membrane	25.22	78.33
Os04t0557800-00	Rice	mitochondrion	57.78	56.27
Os01t0577300-00	Rice	cytosol	12.16	55.74
OQU82117	Sorghum	nucleus	56.17	53.22
TraesCSU01G116000.1	Wheat	nucleus	43.29	53.07
OQU82120	Sorghum	nucleus	55.46	52.72
OQU81560	Sorghum	nucleus	55.46	52.63
Zm00001d000236_P001	Maize	nucleus, plastid	50.98	51.17
Zm00001d026147_P002	Maize	nucleus	55.81	50.65
TraesCS4B01G397800.1	Wheat	nucleus	42.04	46.08
Os01t0576100-00	Rice	nucleus	25.4	45.22
OQU82119	Sorghum	nucleus	41.86	42.86
GSMUA_Achr11P...	Banana	nucleus	35.96	42.68
Os11t0258700-00	Rice	mitochondrion	35.42	40.99
GSMUA_Achr8P11430_001	Banana	nucleus	38.28	39.19
GSMUA_Achr11P...	Banana	nucleus	34.88	35.33
GSMUA_Achr11P...	Banana	nucleus	37.03	34.91
GSMUA_Achr5P20600_001	Banana	nucleus	35.96	34.18
VIT_02s0025g03450.t01	Wine grape	nucleus	37.39	33.28
Solyc08g081140.2.1	Tomato	nucleus	36.31	32.43
AT1G63650.1	Thale cress	nucleus	34.53	32.38
VIT_15s0046g02560.t01	Wine grape	nucleus	37.75	32.02
Bra025508.1-P	Field mustard	nucleus	35.6	31.64
KRH41187	Soybean	nucleus	35.06	31.11
Bra027796.1-P	Field mustard	nucleus	33.63	31.02
Bra027653.1-P	Field mustard	nucleus	32.92	30.87
KRH59908	Soybean	nucleus	34.7	30.74
AT5G41315.2	Thale cress	nucleus	34.35	29.77
KRH65046	Soybean	nucleus	33.27	28.75
KRH48144	Soybean	nucleus	32.74	28.15
AT4G00480.2	Thale cress	nucleus	28.26	27.24
PGSC0003DMT400032140	Potato	nucleus	15.56	24.17
Bra000970.1-P	Field mustard	nucleus	27.91	23.85
Os07t0211500-00	Rice	nucleus	19.86	23.22
Os01t0705700-01	Rice	nucleus	18.78	22.83
Bra037343.1-P	Field mustard	cytosol	26.3	20.68
Os09t0519100-00	Rice	nucleus	9.12	19.32
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	8.94	19.01
Os10t0575000-01	Rice	nucleus	21.47	17.17
Os03t0229100-00	Rice	plastid	8.59	16.78
Os01t0235700-01	Rice	nucleus	18.43	16.69
Os10t0104300-00	Rice	nucleus	9.12	15.6
Os12t0632600-00	Rice	nucleus	9.48	15.06
Os03t0725800-01	Rice	nucleus	9.3	14.48
Os03t0671800-01	Rice	nucleus	8.77	12.73
Os03t0671000-00	Rice	mitochondrion	3.58	7.87

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4336634	EMBL:AK111704	UniProt:B7F427	ProteinID:BAF15444.2
ProteinID:BAS90443.1	ncoils:Coil	ProteinID:EEE61474.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	EnsemblPlantsGene:Os04g0557200	EnsemblPlants:Os04t0557200-01	PFAM:PF00010
PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000188AF10	RefSeq:XP_015635094.1	RefSeq:XP_015635095.1	InterPro:bHLH_dom	SEG:seg	:

Description

basic helix-loop-helix protein 015, GLABRA3B, GLABRA 3BSimilar to Anthocyanin regulatory B protein (Fragment). (Os04t0557200-01)

Coordinates

chr4:-:27881155..27890773

Molecular Weight (calculated)

61028.7 Da

IEP (calculated)

4.856

GRAVY (calculated)

-0.110

Length

559 amino acids

Sequence
(BLAST)

001: MASAPPVQEE PLQPGTNHFR SLLAAAVRSI SWSYAIFWSI STSCPGVLTW NDGFYNGVVK TRKISNSADL TAGQLVVQRS EQLRELYYSL LSGECDHRAR
101: RPIAALSPED LADTEWYYVV CMTYSFQPGQ GLPGKSYASN ASVWLRNAQS ADSKTFLRSL LAKSASIQTI ICIPFTSGVL ELGTTDPVLE DPKLVNRIVA
201: YFQELQFPIC LEVLMSTSPS PNETEDADIV SEGLITHNAI EEGQMVVSDE CVSNANRDPI TMEIDELYSI YEDLDLDMDL DLDTVRFLED NGWPVNPSSF
301: QLVPASSTEA VAAAAAANDV DGVANSQVSC FMAWKSAKSN EMAVPVVTGI ESQKLLKKVV DCGARMSTGR GSRAALTQES GIKNHVISER RRREKLNEMF
401: LILKSIVPSI HKVDKASILE ETIAYLKVLE KRVKELESSS EPSHQRATET GQQRRCEITG KELVSEIGVS GGGDAGREHH HVNVTVTDKV VLLEVQCRWK
501: ELVMTRVFDA IKSLCLDVLS VQASAPDGLL GLKIQAKFAC SGSVAPGMIS EALQKAIGG

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.