Factsheet for Os10t0104300-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92034	Sorghum	nucleus	45.57	47.0
OQU92032	Sorghum	nucleus	46.48	44.71
Zm00001d030232_P001	Maize	nucleus	41.28	42.19
Os03t0229100-00	Rice	plastid	27.83	31.82
Os01t0577300-00	Rice	cytosol	8.87	23.77
Os03t0725800-01	Rice	nucleus	22.94	20.89
Os12t0632600-00	Rice	nucleus	21.1	19.6
Os03t0671800-01	Rice	nucleus	19.57	16.62
Os09t0519100-00	Rice	nucleus	11.62	14.39
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	10.7	13.31
Os01t0576100-00	Rice	nucleus	11.62	12.1
Os01t0705700-01	Rice	nucleus	13.76	9.78
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	15.6	9.12
Os03t0671000-00	Rice	mitochondrion	6.42	8.27
Os11t0258700-00	Rice	mitochondrion	11.62	7.87
Os04t0557800-00	Rice	mitochondrion	13.46	7.67
Os10t0575000-01	Rice	nucleus	15.9	7.44
Os01t0235700-01	Rice	nucleus	12.54	6.65
Os04t0557500-00	Rice	mitochondrion, plasma membrane	1.53	2.78
Os07t0211500-00	Rice	nucleus	3.36	2.3

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	UniProt:A0A0P0XS11	ProteinID:BAT09584.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os10g0104300	EnsemblPlants:Os10t0104300-00	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF35	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0003938BBD	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

basic helix-loop-helix protein 023Helix-loop-helix DNA-binding domain containing protein. (Os10t0104300-00)

Coordinates

chr10:+:345785..347108

Molecular Weight (calculated)

36594.4 Da

IEP (calculated)

5.615

GRAVY (calculated)

-0.463

Length

327 amino acids

Sequence
(BLAST)

001: MCIVFMQEND DDPRALEHLD PLSMQQLAES LANELFNQPQ EQQEEQHGYH NPSLRVLPFV GDINKPEGHT PAAAAIRDSF FSLTNGSSSS LNFSALEQQQ
101: DSGPMTKFCS PLSEMKRGGR RATSSMQEHV IAERKRREKM HQQFTTLASI VPEITKTDKV SVLGSTIEYV HHLRERVKIL QDIQSMGSTQ PPISDARSRA
201: GSGDDEDDDG NNNEVEIKVE ANLQGTTVLL RVVCPEKKGV LIKLLTELEK LGLSTMNTNV VPFADSSLNI TITAQVLHNL LPLYFTPSVL KYKGFWTYWI
301: FPSTMNLDGE SVQVYSTSKY PIRPKSP

Best Arabidopsis Sequence Match ( AT2G22770.1 )
(BLAST)

001: MDDSSFMDLM IDTDEYLIDD WESDFPICGE TNTNPGSESG SGTGFELLAE RPTKQMKTNN NMNSTSSSPS SSSSSGSRTS QVISFGSPDT KTNPVETSLN
101: FSNQVSMDQK VGSKRKDCVN NGGRREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK TDKATVLEDA IKHLKQLQER VKKLEEERVV TKKMDQSIIL
201: VKRSQVYLDD DSSSYSSTCS AASPLSSSSD EVSIFKQTMP MIEARVSDRD LLIRVHCEKN KGCMIKILSS LEKFRLEVVN SFTLPFGNST LVITILTKMD
301: NKFSRPVEEV VKNIRVALAE

Arabidopsis Description

NAI1NAI1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.