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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU5Hr1G002090.11 Barley nucleus 57.67 53.14
Zm00001d031167_P002 Maize nucleus 59.09 52.93
TraesCS5D01G020600.1 Wheat nucleus 55.68 52.41
KXG24110 Sorghum nucleus 57.39 50.75
TraesCS5A01G014800.1 Wheat nucleus 56.53 50.64
TraesCS5B01G013000.2 Wheat nucleus 52.27 48.68
TraesCS7A01G558700.1 Wheat nucleus 42.33 46.42
TraesCS7B01G483600.1 Wheat nucleus 40.34 44.24
Os03t0671800-01 Rice nucleus 43.75 40.0
HORVU7Hr1G120420.2 Barley nucleus 36.65 33.42
Os03t0725800-01 Rice nucleus 32.39 31.75
Os03t0229100-00 Rice plastid 22.44 27.62
Os01t0577300-00 Rice cytosol 8.24 23.77
Os03t0671000-00 Rice mitochondrion 15.62 21.65
Os10t0104300-00 Rice nucleus 19.6 21.1
Os08t0543700-00 Rice nucleus, peroxisome, plastid 14.77 19.77
Os09t0519100-00 Rice nucleus 14.2 18.94
Os01t0576100-00 Rice nucleus 10.51 11.78
Os01t0705700-01 Rice nucleus 14.77 11.3
Os10t0575000-01 Rice nucleus 20.17 10.16
Os01t0235700-01 Rice nucleus 17.33 9.89
Os04t0557200-01 Rice cytosol, nucleus, peroxisome 15.06 9.48
Os04t0557800-00 Rice mitochondrion 15.06 9.23
Os11t0258700-00 Rice mitochondrion 10.8 7.87
Os04t0557500-00 Rice mitochondrion, plasma membrane 3.12 6.11
Os07t0211500-00 Rice nucleus 4.83 3.56
Protein Annotations
EntrezGene:107277136MapMan:15.5.32MapMan:25.4.1.7Gene3D:4.10.280.10UniProt:A0A0P0YCR0ProteinID:BAT18225.1
ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0046983InterPro:HLH_DNA-bd_sf
InterPro:IPR011598InterPro:IPR036638EnsemblPlantsGene:Os12g0632600EnsemblPlants:Os12t0632600-00PFAM:PF00010PFscan:PS50888
PANTHER:PTHR23042PANTHER:PTHR23042:SF74SMART:SM00353SUPFAM:SSF47459UniParc:UPI000393906DRefSeq:XP_015618735.1
InterPro:bHLH_domSEG:seg::::
Description
basic helix-loop-helix protein 021Similar to Helix-loop-helix DNA-binding domain containing protein. (Os12t0632600-00)
Coordinates
chr12:+:27088697..27091800
Molecular Weight (calculated)
36960.2 Da
IEP (calculated)
5.718
GRAVY (calculated)
-0.366
Length
352 amino acids
Sequence
(BLAST)
001: MDDSSFFMQW AMDTLHQLPS DSTAAAAYAT DVAGDSGAFP SLQALRNASA AGGGGGFRDL TVQVDQVHRA NSWSSSDSPG GGAATAAAGW SPHVTGGGGR
101: GHRPMSWNFS AASAQPTTED SGGGGGGGVV PAPLQAMETT ATARAAVKKG GGGGSSSSAA APGYVQDHII AERRRREKIN QRFIELSTVI PGLKKMDKAT
201: ILGDAVKYVK ELQEKVKTLE EEDGGGRPAA MVVRKSSCSG RQSAAGDGDG EGRVPEIEVR VWERSVLVRV QCGNSRGLLV RLLSEVEELR LGITHTSVMP
301: FPASTVIITI TAKVEEGFNS TVDEIMRRLN SALLDQYNNG SVEETDQEIR RE
Best Arabidopsis Sequence Match ( AT4G37850.2 )
(BLAST)
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.