Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G046800.1 | Wheat | nucleus | 32.63 | 31.47 |
| TraesCS3B01G036000.1 | Wheat | nucleus | 32.11 | 31.28 |
| TraesCS3D01G033100.1 | Wheat | mitochondrion, nucleus | 27.89 | 29.12 |
| Bra016164.1-P | Field mustard | nucleus | 27.89 | 27.04 |
| CDX96296 | Canola | nucleus | 27.89 | 27.04 |
| HORVU3Hr1G004310.1 | Barley | nucleus | 25.79 | 26.63 |
| AT1G71030.1 | Thale cress | nucleus | 26.84 | 26.15 |
| KXG31995 | Sorghum | nucleus | 22.63 | 25.9 |
| CDX72770 | Canola | nucleus | 26.32 | 25.51 |
| Bra007957.1-P | Field mustard | nucleus | 22.63 | 22.51 |
| CDY03705 | Canola | nucleus | 22.63 | 21.94 |
Protein Annotations
| EnsemblPlants:Os01t0127450-00 | EnsemblPlantsGene:Os01g0127450 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF507 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:BAS70185.1 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0003938A81 | UniProt:A0A0N7KC94 | MapMan:15.5.2.1 | : | : |
Description
Similar to MYBL2 (ARABIDOPSIS MYB-LIKE 2); DNA binding / transcription factor. (Os01t0127450-00)
Coordinates
chr1:+:1511964..1512646
Molecular Weight (calculated)
21391.9 Da
IEP (calculated)
7.674
GRAVY (calculated)
-1.019
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCPRRRSSA SLQVSSQPPP RLISEHLPAG DPPSPLSRSR KRRSFSEEED ELLLKLHALL GNRWSLIAGR LPGRTDKEVM NHWNSKLMDS TIEHPPSLHD
101: DEHRRRRRRL RSEAHDERGA KHPGHNSSSS SKDVNGDECT VADDASSCNH QDDNRAVAEL NLELTLSTPC IYLLLGQDRE DGSKSNQGLI
101: DEHRRRRRRL RSEAHDERGA KHPGHNSSSS SKDVNGDECT VADDASSCNH QDDNRAVAEL NLELTLSTPC IYLLLGQDRE DGSKSNQGLI
001: MNYLRPDLKR GNFTEEEDEL IIKLHSLLGN KWSLIAGRLP GRTDNEIKNY WNTHIKRKLL SRGIDPNSHR LINESVVSPS SLQNDVVETI HLDFSGPVKP
101: EPVREEIGMV NNCESSGTTS EKDYGNEEDW VLNLELSVGP SYRYESTRKV SVVDSAESTR RWGSELFGAH ESDAVCLCCR IGLFRNESCR NCRVSDVRTH
101: EPVREEIGMV NNCESSGTTS EKDYGNEEDW VLNLELSVGP SYRYESTRKV SVVDSAESTR RWGSELFGAH ESDAVCLCCR IGLFRNESCR NCRVSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.