Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G020370.2 | |
| HORVU2Hr1G096810.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G71030.1 | HORVU2Hr1G096810.5 | AT1G63650.1 | 15361138 |
| AT1G71030.1 | HORVU1Hr1G020370.2 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G036000.1 | Wheat | nucleus | 65.22 | 61.54 |
| TraesCS3A01G046800.1 | Wheat | nucleus | 59.24 | 55.33 |
| TraesCS3D01G033100.1 | Wheat | mitochondrion, nucleus | 48.91 | 49.45 |
| KXG31995 | Sorghum | nucleus | 25.0 | 27.71 |
| AT1G71030.1 | Thale cress | nucleus | 28.8 | 27.18 |
| Os01t0127450-00 | Rice | nucleus | 26.63 | 25.79 |
| Bra007957.1-P | Field mustard | nucleus | 26.63 | 25.65 |
| Bra016164.1-P | Field mustard | nucleus | 26.63 | 25.0 |
| CDX96296 | Canola | nucleus | 26.63 | 25.0 |
| CDY03705 | Canola | nucleus | 26.63 | 25.0 |
| CDX72770 | Canola | nucleus | 26.09 | 24.49 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G004310.1 | EnsemblPlantsGene:HORVU3Hr1G004310 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF929 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000B479D4C | UniProt:A0A287JZ98 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:11255620..11256671
Molecular Weight (calculated)
20074.4 Da
IEP (calculated)
10.211
GRAVY (calculated)
-0.885
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MREPRAPRRS PCKQPMTAEK HGRRWPRRTN RSSRDAELLS SSSSSSSGAP SLQPTKATGG LLAGTTTTTG FSDDEEDLLI RLHALLGNRW SIIAGRLPGR
101: TGEEVEAHWG SPAMRRRTGG ADPDNHRVLL QAFLASSLHD QHGEHTRRTT VPNQERDELP GRPYDDGAVS DAGSSKACAL YIGR
101: TGEEVEAHWG SPAMRRRTGG ADPDNHRVLL QAFLASSLHD QHGEHTRRTT VPNQERDELP GRPYDDGAVS DAGSSKACAL YIGR
001: MQHRKRCRLR GRNYVRPEVK QRNFSKDEDD LILKLHALLG NRWSLIAGRL PGRTDNEVRI HWETYLKRKL VKMGIDPTNH RLHHHTNYIS RRHLHSSHKE
101: HETKIISDQS SSVSESCGVT ILPIPSTNCS EDSTSTGRSH LPDLNIGLIP AVTSLPALCL QDSSESSTNG STGQETLLLF R
101: HETKIISDQS SSVSESCGVT ILPIPSTNCS EDSTSTGRSH LPDLNIGLIP AVTSLPALCL QDSSESSTNG STGQETLLLF R
Arabidopsis Description
ATMYBL2At1g71030/F23N20_2 [Source:UniProtKB/TrEMBL;Acc:Q9C9A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.