Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G033100.1 | Wheat | mitochondrion, nucleus | 67.51 | 73.08 |
| TraesCS3B01G036000.1 | Wheat | nucleus | 72.08 | 72.82 |
| HORVU3Hr1G004310.1 | Barley | nucleus | 55.33 | 59.24 |
| Os01t0127450-00 | Rice | nucleus | 31.47 | 32.63 |
| KXG31995 | Sorghum | nucleus | 26.9 | 31.93 |
| AT1G71030.1 | Thale cress | nucleus | 26.4 | 26.67 |
| Bra007957.1-P | Field mustard | nucleus | 25.38 | 26.18 |
| Bra016164.1-P | Field mustard | nucleus | 25.38 | 25.51 |
| CDX96296 | Canola | nucleus | 25.38 | 25.51 |
| CDY03705 | Canola | nucleus | 25.38 | 25.51 |
| CDX72770 | Canola | nucleus | 24.87 | 25.0 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G046800.1 | EnsemblPlantsGene:TraesCS3A01G046800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF507 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:24877461..24878157
Molecular Weight (calculated)
21629.3 Da
IEP (calculated)
11.116
GRAVY (calculated)
-0.787
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MREPRRSPSR QPMTASRGRQ WRRRRPKLVT ERLTTASSDA RSLKPTTATR GLLAGTTTSF SEDEEDLLIK LHALLGNRWS IIAGRLPGRT GEEVEAHWGS
101: PAMRRRAAGG ADPDSHRVLL QALLASSHDQ PTQPGEHLRR AVPNQVRDER PGRPYDDSAV SDAGSRRACA SSDADSSWFL AELNLELTLS TPSSAST
101: PAMRRRAAGG ADPDSHRVLL QALLASSHDQ PTQPGEHLRR AVPNQVRDER PGRPYDDSAV SDAGSRRACA SSDADSSWFL AELNLELTLS TPSSAST
001: MQHRKRCRLR GRNYVRPEVK QRNFSKDEDD LILKLHALLG NRWSLIAGRL PGRTDNEVRI HWETYLKRKL VKMGIDPTNH RLHHHTNYIS RRHLHSSHKE
101: HETKIISDQS SSVSESCGVT ILPIPSTNCS EDSTSTGRSH LPDLNIGLIP AVTSLPALCL QDSSESSTNG STGQETLLLF R
101: HETKIISDQS SSVSESCGVT ILPIPSTNCS EDSTSTGRSH LPDLNIGLIP AVTSLPALCL QDSSESSTNG STGQETLLLF R
Arabidopsis Description
ATMYBL2At1g71030/F23N20_2 [Source:UniProtKB/TrEMBL;Acc:Q9C9A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.