Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007957.1-P | Field mustard | nucleus | 94.9 | 97.38 |
| CDX96296 | Canola | nucleus | 73.47 | 73.47 |
| CDX72770 | Canola | nucleus | 72.96 | 72.96 |
| AT1G71030.1 | Thale cress | nucleus | 71.94 | 72.31 |
| TraesCS3D01G033100.1 | Wheat | mitochondrion, nucleus | 25.0 | 26.92 |
| HORVU3Hr1G004310.1 | Barley | nucleus | 25.0 | 26.63 |
| KXG31995 | Sorghum | nucleus | 21.94 | 25.9 |
| TraesCS3A01G046800.1 | Wheat | nucleus | 25.51 | 25.38 |
| TraesCS3B01G036000.1 | Wheat | nucleus | 25.0 | 25.13 |
| Os01t0127450-00 | Rice | nucleus | 21.94 | 22.63 |
Protein Annotations
| EnsemblPlants:CDY03705 | EnsemblPlantsGene:GSBRNA2T00116507001 | Gene3D:1.10.10.60 | GO:A0A078EP17 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY03705 | ProteinID:CDY03705.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EED350 | MapMan:15.5.2.1 | : |
Description
BnaA02g15320D
Coordinates
chrLK031945:+:649262..650304
Molecular Weight (calculated)
22325.6 Da
IEP (calculated)
8.967
GRAVY (calculated)
-0.560
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIVCVRALY PPSRLLHRAE RCRVGGRNYE KPELKQSNFS KDEDDLILRL HALLGNRWSL IAGRLPGRTD TEIRIHWETY LKRKLMKMGI DPTNHRLYHH
101: ANYISRQYLN SSHKKLETDI ISDQSSSVSE SCDMRMLPVS STNCYDSASS SAGHSRLPDL NISLIPAETV VSRPVCGLQE SNSNGSTRQE TLLLFQ
101: ANYISRQYLN SSHKKLETDI ISDQSSSVSE SCDMRMLPVS STNCYDSASS SAGHSRLPDL NISLIPAETV VSRPVCGLQE SNSNGSTRQE TLLLFQ
001: MNKTRLRALS PPSGMQHRKR CRLRGRNYVR PEVKQRNFSK DEDDLILKLH ALLGNRWSLI AGRLPGRTDN EVRIHWETYL KRKLVKMGID PTNHRLHHHT
101: NYISRRHLHS SHKEHETKII SDQSSSVSES CGVTILPIPS TNCSEDSTST GRSHLPDLNI GLIPAVTSLP ALCLQDSSES STNGSTGQET LLLFR
101: NYISRRHLHS SHKEHETKII SDQSSSVSES CGVTILPIPS TNCSEDSTST GRSHLPDLNI GLIPAVTSLP ALCLQDSSES STNGSTGQET LLLFR
Arabidopsis Description
ATMYBL2At1g71030/F23N20_2 [Source:UniProtKB/TrEMBL;Acc:Q9C9A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.