Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G046800.1 | Wheat | nucleus | 73.08 | 67.51 |
| TraesCS3B01G036000.1 | Wheat | nucleus | 66.48 | 62.05 |
| HORVU3Hr1G004310.1 | Barley | nucleus | 49.45 | 48.91 |
| KXG31995 | Sorghum | nucleus | 26.37 | 28.92 |
| Os01t0127450-00 | Rice | nucleus | 29.12 | 27.89 |
| Bra007957.1-P | Field mustard | nucleus | 27.47 | 26.18 |
| AT1G71030.1 | Thale cress | nucleus | 28.02 | 26.15 |
| CDY03705 | Canola | nucleus | 26.92 | 25.0 |
| Bra016164.1-P | Field mustard | nucleus | 26.37 | 24.49 |
| CDX96296 | Canola | nucleus | 26.37 | 24.49 |
| CDX72770 | Canola | nucleus | 25.82 | 23.98 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G033100.1 | EnsemblPlantsGene:TraesCS3D01G033100 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF929 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:12281820..12282472
Molecular Weight (calculated)
20131.7 Da
IEP (calculated)
8.839
GRAVY (calculated)
-0.686
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MREPRRSPSR QPTTARSRRR PKLVTERLTT TISDARSLQP AMATGGLLAG TTTNFSEDEE DLLIKLHALL GNRWSIIAGR LPGRTGEEVE AHWGSPAMRR
101: RTGGADPDSH RVLLQALLAS SHDQHGEHLP RVIPNEVRRE HRGRPSFSND GLDDWALSDA DSRCLAQVNL ELSLSMPCST ST
101: RTGGADPDSH RVLLQALLAS SHDQHGEHLP RVIPNEVRRE HRGRPSFSND GLDDWALSDA DSRCLAQVNL ELSLSMPCST ST
001: MQHRKRCRLR GRNYVRPEVK QRNFSKDEDD LILKLHALLG NRWSLIAGRL PGRTDNEVRI HWETYLKRKL VKMGIDPTNH RLHHHTNYIS RRHLHSSHKE
101: HETKIISDQS SSVSESCGVT ILPIPSTNCS EDSTSTGRSH LPDLNIGLIP AVTSLPALCL QDSSESSTNG STGQETLLLF R
101: HETKIISDQS SSVSESCGVT ILPIPSTNCS EDSTSTGRSH LPDLNIGLIP AVTSLPALCL QDSSESSTNG STGQETLLLF R
Arabidopsis Description
ATMYBL2At1g71030/F23N20_2 [Source:UniProtKB/TrEMBL;Acc:Q9C9A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.