Factsheet for Os01t0695900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0576100-00
Os01t0577300-00
Os04t0557200-01
Os04t0557500-00
Os04t0557800-00
Os11t0258700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13540.1	Os01t0576100-00	AT1G63650.1	15361138
AT3G13540.1	Os01t0577300-00	AT1G63650.1	15361138
AT3G13540.1	Os04t0557200-01	AT1G63650.1	15361138
AT3G13540.1	Os04t0557500-00	AT1G63650.1	15361138
AT3G13540.1	Os04t0557800-00	AT1G63650.1	15361138
AT3G13540.1	Os11t0258700-00	AT1G63650.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G257800.1	Wheat	nucleus	61.82	62.73
TraesCS3A01G257800.1	Wheat	nucleus	60.0	62.26
TraesCS3B01G290600.1	Wheat	nucleus	61.09	61.76
HORVU0Hr1G006810.2	Barley	nucleus	57.45	58.96
KXG33190	Sorghum	nucleus	58.55	57.5
Zm00001d011645_P001	Maize	nucleus	47.27	56.52
CDY23616	Canola	nucleus	40.0	48.25
GSMUA_Achr2P19380_001	Banana	nucleus	41.09	46.31
AT3G13540.1	Thale cress	nucleus	41.45	45.78
Bra027423.1-P	Field mustard	nucleus	40.36	43.53
CDY59254	Canola	nucleus	40.36	43.53
CDY24177	Canola	nucleus	39.64	43.43
CDY07085	Canola	nucleus	39.27	43.03
Bra039395.1-P	Field mustard	nucleus	38.91	42.63
GSMUA_Achr6P14840_001	Banana	nucleus	44.73	42.41
GSMUA_Achr10P...	Banana	nucleus	45.82	42.28
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	43.27	38.14
VIT_08s0007g07230.t01	Wine grape	nucleus	44.36	38.12
Solyc01g005660.1.1	Tomato	nucleus, plastid	42.55	37.99
GSMUA_Achr7P13700_001	Banana	nucleus	39.27	35.18
Os05t0429900-01	Rice	nucleus	32.73	34.62
KRH17997	Soybean	nucleus, plastid	43.64	33.9
KRH16413	Soybean	nucleus	43.64	33.24
Os09t0538400-01	Rice	extracellular	29.82	32.67
GSMUA_Achr5P06530_001	Banana	nucleus	42.55	31.2
Os01t0874300-01	Rice	extracellular, nucleus	32.0	30.66
Os11t0180900-00	Rice	nucleus	31.64	29.49
Os01t0305900-01	Rice	nucleus	32.0	27.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:4323897	EMBL:AK108259	ProteinID:BAC10731.1	ProteinID:BAF05878.1
ProteinID:BAS73849.1	GO:GO:0000003	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987	GO:GO:0010090	GO:GO:0010214
GO:GO:0010468	GO:GO:0016043	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0048354
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os01g0695900	EnsemblPlants:Os01t0695900-01	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF942	UniProt:Q7F3D6	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00000ABDBF	RefSeq:XP_015644524.1	SEG:seg	:	:

Description

myb transcription factor 4, transcription factor MYB4, endosperm-specific gene 11, GLABRA1C, GLABRA 1COSMYB4. (Os01t0695900-01)

Coordinates

chr1:+:28796526..28797649

Molecular Weight (calculated)

29794.9 Da

IEP (calculated)

6.107

GRAVY (calculated)

-0.543

Length

275 amino acids

Sequence
(BLAST)

001: MKRKRPAALR GGEEAAAAAL KRGPWTPEED EVLARFVARE GCDRWRTLPR RAGLLRCGKS CRLRWMNYLR PDIKRCPIAD DEEDLILRLH RLLGNRWSLI
101: AGRLPGRTDN EIKNYWNSHL SKKLIAQGID PRTHKPLTAA ADHSNAAAAV AATSYKKAVP AKPPRTASSP AAGIECSDDR ARPADGGGDF AAMVSAADAE
201: GFEGGFGDQF CAEDAVHGGF DMGSASAMVG DDDFSSFLDS LINDEQLGDL FVVEGNDHEH GNGEIGHGDV MESKQ

Best Arabidopsis Sequence Match ( AT3G13540.1 )
(BLAST)

001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD

Arabidopsis Description

MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.