Factsheet for Os01t0874300-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 26072143

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01839	Sorghum	nucleus	78.05	83.27
TraesCS3B01G416400.1	Wheat	nucleus	77.0	82.77
TraesCS3A01G384400.1	Wheat	nucleus	77.0	82.77
Zm00001d012255_P001	Maize	nucleus	72.13	82.47
Zm00001d042665_P001	Maize	nucleus	75.26	82.44
TraesCS3D01G377300.1	Wheat	nucleus	77.35	81.92
HORVU3Hr1G082210.1	Barley	nucleus	76.66	81.48
GSMUA_AchrUn_...	Banana	nucleus	41.81	80.54
GSMUA_Achr3P22200_001	Banana	nucleus	57.49	76.04
GSMUA_Achr2P20600_001	Banana	nucleus	44.95	73.71
Os05t0429900-01	Rice	nucleus	62.72	69.23
GSMUA_Achr6P25420_001	Banana	nucleus	54.36	65.82
GSMUA_Achr5P26000_001	Banana	nucleus	47.74	65.24
GSMUA_Achr6P07260_001	Banana	mitochondrion	44.25	63.82
GSMUA_Achr10P...	Banana	nucleus	47.04	62.21
GSMUA_Achr8P32480_001	Banana	nucleus	42.51	61.0
GSMUA_Achr5P17010_001	Banana	nucleus	49.48	58.92
Os09t0538400-01	Rice	extracellular	50.17	57.37
AT1G35515.1	Thale cress	nucleus	42.16	57.08
Bra000680.1-P	Field mustard	nucleus	42.86	54.91
CDX90721	Canola	nucleus	42.86	54.91
GSMUA_Achr9P08600_001	Banana	nucleus	51.92	54.78
AT4G09460.1	Thale cress	nucleus	44.25	53.81
CDY05057	Canola	nucleus	42.51	53.74
Solyc06g065100.2.1	Tomato	nucleus	49.83	51.25
PGSC0003DMT400080427	Potato	nucleus	49.48	49.82
VIT_07s0130g00040.t01	Wine grape	nucleus	50.17	49.66
Os11t0180900-00	Rice	nucleus	50.52	49.15
GSMUA_Achr6P12930_001	Banana	nucleus	47.74	47.9
KRH63931	Soybean	nucleus	50.17	47.68
KRH54016	Soybean	nucleus	49.83	47.51
Os01t0695900-01	Rice	nucleus	30.66	32.0
Os01t0305900-01	Rice	nucleus	32.4	29.34

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:4324770	EMBL:AK060684	ProteinID:BAB86217.1	ProteinID:BAB89293.1
ProteinID:BAB92433.1	ProteinID:BAF06871.1	ProteinID:BAS75486.1	ProteinID:EAZ14337.1	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os01g0874300	EnsemblPlants:Os01t0874300-01	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF617	UniProt:Q8RUI9	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000009D794	RefSeq:XP_015627699.1	SEG:seg	:	:

Description

R2R3-MYBSimilar to MybHv5 (Fragment). (Os01t0874300-01)

Coordinates

chr1:+:37932258..37933372

Molecular Weight (calculated)

30971.6 Da

IEP (calculated)

9.373

GRAVY (calculated)

-0.572

Length

287 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY LRPDLKRGNF TDDDDELIIK LHALLGNKWS LIAGQLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPQTHRPVS AGSSAAAASG LTTTASTAAF PSLAPAPPPQ QHRLHNPVHA AAPSNASFAR SAASPPSEDG HSSSGGSSDA
201: PRCPDLNLDL DLDLSMSLPS SPPKTPAAAS STTASRHHHH QQQKTICLCY HLGVRNGDVC SCKAAAPSPA GPRAFRFLRP LEEGQYI

Best Arabidopsis Sequence Match ( AT4G38620.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK

Arabidopsis Description

MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.