Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000680.1-P | Field mustard | nucleus | 94.71 | 95.98 |
| CDX90721 | Canola | nucleus | 94.71 | 95.98 |
| AT4G09460.1 | Thale cress | nucleus | 83.26 | 80.08 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.34 | 75.17 |
| AT1G35515.1 | Thale cress | nucleus | 63.88 | 68.4 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 51.54 | 66.86 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 51.54 | 58.79 |
| GSMUA_Achr10P... | Banana | nucleus | 53.3 | 55.76 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 48.9 | 55.5 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 52.42 | 54.84 |
| EES16743 | Sorghum | nucleus | 51.1 | 53.95 |
| CDX91687 | Canola | nucleus | 53.3 | 53.78 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 48.9 | 52.86 |
| Zm00001d041853_P001 | Maize | nucleus | 51.1 | 51.33 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 51.98 | 49.79 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 52.42 | 49.38 |
| TraesCS1A01G268800.1 | Wheat | nucleus | 53.3 | 48.99 |
| TraesCS1D01G268900.1 | Wheat | nucleus | 52.86 | 48.58 |
| HORVU1Hr1G074260.1 | Barley | nucleus | 53.3 | 48.21 |
| TraesCS1B01G279400.1 | Wheat | nucleus | 52.42 | 48.18 |
| TraesCS5A01G111300.1 | Wheat | nucleus | 51.54 | 47.95 |
| Zm00001d012255_P001 | Maize | nucleus | 52.86 | 47.81 |
| Os05t0429900-01 | Rice | nucleus | 54.63 | 47.69 |
| Zm00001d042665_P001 | Maize | nucleus | 54.19 | 46.95 |
| CDY21378 | Canola | nucleus | 55.51 | 46.84 |
| CDY25747 | Canola | nucleus | 54.19 | 46.59 |
| CDY04798 | Canola | nucleus | 55.07 | 46.47 |
| Zm00001d010201_P001 | Maize | nucleus | 50.66 | 46.18 |
| CDY12520 | Canola | nucleus | 54.63 | 45.59 |
| EES01839 | Sorghum | nucleus | 53.74 | 45.35 |
| Zm00001d038338_P001 | Maize | nucleus | 51.54 | 45.35 |
| KXG22070 | Sorghum | nucleus | 51.98 | 45.04 |
| HORVU5Hr1G036900.1 | Barley | nucleus | 51.98 | 44.7 |
| TraesCS3A01G384400.1 | Wheat | nucleus | 52.42 | 44.57 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 53.3 | 44.49 |
| Solyc06g065100.2.1 | Tomato | nucleus | 54.19 | 44.09 |
| TraesCS3B01G416400.1 | Wheat | nucleus | 51.54 | 43.82 |
| HORVU3Hr1G082210.1 | Barley | nucleus | 51.98 | 43.7 |
| CDY40652 | Canola | nucleus | 51.98 | 43.54 |
| TraesCS3D01G377300.1 | Wheat | nucleus | 51.98 | 43.54 |
| CDX72510 | Canola | nucleus | 51.98 | 43.54 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 49.78 | 43.46 |
| Zm00001d004744_P001 | Maize | nucleus | 52.42 | 43.27 |
| PGSC0003DMT400080427 | Potato | nucleus | 54.19 | 43.16 |
| TraesCS5B01G119300.1 | Wheat | nucleus | 51.54 | 43.01 |
| Os01t0874300-01 | Rice | extracellular, nucleus | 53.74 | 42.51 |
| CDX90285 | Canola | nucleus | 52.42 | 42.05 |
| GSMUA_Achr10P... | Banana | nucleus | 52.42 | 41.9 |
| CDX72743 | Canola | nucleus | 54.19 | 41.84 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 52.42 | 41.61 |
| CDY22416 | Canola | nucleus | 53.74 | 41.5 |
| TraesCS4A01G217800.1 | Wheat | nucleus | 52.42 | 41.32 |
| TraesCS4D01G092900.1 | Wheat | nucleus | 52.42 | 41.18 |
| OQU78830 | Sorghum | nucleus | 50.66 | 40.78 |
| CDX75478 | Canola | nucleus | 51.54 | 40.77 |
| CDX69102 | Canola | nucleus | 51.1 | 40.56 |
| CDY52797 | Canola | nucleus | 45.81 | 40.31 |
| Zm00001d053060_P001 | Maize | nucleus | 50.66 | 39.93 |
| CDY72116 | Canola | nucleus | 50.22 | 39.72 |
| CDY02243 | Canola | nucleus | 50.22 | 39.72 |
| Os11t0180900-00 | Rice | nucleus | 51.54 | 39.66 |
| CDY12092 | Canola | nucleus | 52.42 | 39.14 |
| TraesCS5D01G128200.2 | Wheat | nucleus | 51.54 | 38.24 |
| CDX69561 | Canola | nucleus | 32.6 | 37.56 |
| CDY09882 | Canola | nucleus | 32.16 | 36.87 |
| OQU83016 | Sorghum | nucleus | 51.1 | 36.83 |
| CDY23616 | Canola | nucleus | 36.56 | 36.4 |
| CDX85583 | Canola | nucleus | 31.28 | 35.86 |
| CDX91023 | Canola | nucleus | 31.28 | 35.86 |
| CDY27055 | Canola | nucleus | 30.84 | 35.35 |
| CDY07085 | Canola | nucleus | 38.77 | 35.06 |
| CDY24177 | Canola | nucleus | 38.33 | 34.66 |
| CDY65324 | Canola | nucleus | 30.84 | 34.48 |
| CDY59254 | Canola | nucleus | 37.89 | 33.73 |
| CDY51833 | Canola | nucleus | 29.52 | 33.67 |
| CDY56151 | Canola | nucleus | 29.07 | 33.17 |
| HORVU4Hr1G018360.2 | Barley | nucleus | 52.42 | 32.6 |
| CDY49363 | Canola | nucleus | 37.0 | 32.18 |
| CDX84119 | Canola | nucleus | 37.0 | 32.18 |
| CDY66972 | Canola | nucleus | 28.19 | 32.0 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 52.86 | 31.5 |
| CDY05636 | Canola | nucleus | 37.89 | 29.66 |
| CDX86461 | Canola | nucleus | 29.07 | 29.33 |
| CDY44571 | Canola | nucleus | 32.16 | 28.63 |
| CDY00035 | Canola | nucleus | 40.09 | 27.58 |
| CDX83327 | Canola | nucleus | 41.41 | 26.7 |
| CDX95725 | Canola | nucleus | 41.41 | 26.63 |
| CDY49609 | Canola | nucleus | 39.65 | 25.79 |
| CDX86237 | Canola | nucleus | 38.33 | 25.36 |
| CDX85403 | Canola | nucleus | 37.89 | 25.15 |
| CDY55384 | Canola | nucleus | 30.84 | 23.73 |
| CDX80105 | Canola | nucleus | 31.72 | 22.02 |
| CDY27486 | Canola | plastid | 4.85 | 4.66 |
Protein Annotations
| EnsemblPlants:CDY05057 | EnsemblPlantsGene:GSBRNA2T00119816001 | Gene3D:1.10.10.60 | GO:A0A078EVT5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF947 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY05057 | ProteinID:CDY05057.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE9DAE | MapMan:15.5.2.1 | : |
Description
BnaC03g28550D
Coordinates
chrLK031959:+:311048..312223
Molecular Weight (calculated)
25384.8 Da
IEP (calculated)
9.642
GRAVY (calculated)
-0.819
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR IHGEGSWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF SDEEDKVIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLRSHG IDPQTHRPIK DSIANGAVDN SFTVRPKTDI SSDNVASTSG TTTDEDLRQN GDCYYNDNSG EKEVNLDLTL GSGSTSLVRS
201: GRKSGTGSSA DSKPWWDPVM AARLSLL
101: DNEIKNYWNT HIKRKLRSHG IDPQTHRPIK DSIANGAVDN SFTVRPKTDI SSDNVASTSG TTTDEDLRQN GDCYYNDNSG EKEVNLDLTL GSGSTSLVRS
201: GRKSGTGSSA DSKPWWDPVM AARLSLL
001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
Arabidopsis Description
MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.