Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80105 | Canola | nucleus | 93.56 | 84.4 |
| AT2G47460.1 | Thale cress | nucleus | 64.75 | 51.48 |
| CDX95725 | Canola | nucleus | 42.71 | 35.69 |
| CDX83327 | Canola | nucleus | 42.37 | 35.51 |
| CDY05636 | Canola | nucleus | 32.54 | 33.1 |
| CDX85403 | Canola | nucleus | 37.29 | 32.16 |
| CDX86237 | Canola | nucleus | 37.29 | 32.07 |
| CDY00035 | Canola | nucleus | 35.25 | 31.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.9 | 31.25 |
| CDX90721 | Canola | nucleus | 23.73 | 31.25 |
| CDY05057 | Canola | nucleus | 23.73 | 30.84 |
| CDX91687 | Canola | nucleus | 23.39 | 30.67 |
| CDY49609 | Canola | nucleus | 36.27 | 30.66 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 37.29 | 29.65 |
| CDY09882 | Canola | nucleus | 19.32 | 28.79 |
| CDX69561 | Canola | nucleus | 18.98 | 28.43 |
| CDX91023 | Canola | nucleus | 18.98 | 28.28 |
| CDX85583 | Canola | nucleus | 18.98 | 28.28 |
| CDY40652 | Canola | nucleus | 25.76 | 28.04 |
| CDX72510 | Canola | nucleus | 25.76 | 28.04 |
| KRH37017 | Soybean | nucleus | 31.53 | 27.84 |
| CDY27055 | Canola | nucleus | 18.64 | 27.78 |
| KRH50769 | Soybean | nucleus | 31.53 | 27.6 |
| KRH11988 | Soybean | nucleus | 30.85 | 27.58 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 29.83 | 27.41 |
| CDY65324 | Canola | nucleus | 18.64 | 27.09 |
| CDY23616 | Canola | nucleus | 20.68 | 26.75 |
| CDY24177 | Canola | nucleus | 22.71 | 26.69 |
| KRH02323 | Soybean | nucleus | 31.53 | 26.57 |
| CDY25747 | Canola | nucleus | 23.73 | 26.52 |
| CDY07085 | Canola | nucleus | 22.37 | 26.29 |
| CDY04798 | Canola | nucleus | 23.73 | 26.02 |
| CDY21378 | Canola | nucleus | 23.73 | 26.02 |
| CDX69102 | Canola | nucleus | 25.08 | 25.87 |
| CDX75478 | Canola | nucleus | 25.08 | 25.78 |
| CDY56151 | Canola | nucleus | 17.29 | 25.63 |
| CDY12520 | Canola | nucleus | 23.39 | 25.37 |
| CDY59254 | Canola | nucleus | 21.69 | 25.1 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 32.54 | 25.07 |
| CDY51833 | Canola | nucleus | 16.61 | 24.62 |
| CDX90285 | Canola | nucleus | 23.39 | 24.38 |
| CDY72116 | Canola | nucleus | 23.39 | 24.04 |
| CDY02243 | Canola | nucleus | 23.39 | 24.04 |
| CDY49363 | Canola | nucleus | 21.02 | 23.75 |
| CDY52797 | Canola | nucleus | 20.68 | 23.64 |
| CDY22416 | Canola | nucleus | 23.39 | 23.47 |
| CDX72743 | Canola | nucleus | 23.39 | 23.47 |
| CDX84119 | Canola | nucleus | 20.68 | 23.37 |
| CDY12092 | Canola | nucleus | 23.39 | 22.7 |
| CDY27486 | Canola | plastid | 17.63 | 22.03 |
| CDY66972 | Canola | nucleus | 14.58 | 21.5 |
| CDY44571 | Canola | nucleus | 16.95 | 19.61 |
| CDX86461 | Canola | nucleus | 14.92 | 19.56 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078J0W2 | UniProt:A0A078J0W2 | EnsemblPlants:CDY55384 | ProteinID:CDY55384 |
| ProteinID:CDY55384.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00016789001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF203 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EED527 | SEG:seg |
Description
BnaC04g52010DBnaC04g52010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0W2]
Coordinates
chrLK033398:+:53636..56744
Molecular Weight (calculated)
32601.9 Da
IEP (calculated)
5.845
GRAVY (calculated)
-0.860
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKV GIKRGRWTAE EDQILSSYIQ SNGEGSWRSL PKNAVSQSQR GNITPEEEEL VVKMHSTLGN RWSLIASHLP GRTDNEIKNY WNSHLSRKLH
101: YIRKSHNVPA VTMNPPPTSQ RLPEKRRPGR TSRSAMKPKT HKPKTRKTKK TSAQPEPDAN VAINAVVGEE ALMMELSGAE ADLGPHCCNT NNNNNNNNNL
201: MSINGDNGVL SFDEHDIIDL LLDESDPGNV GSSETSNLEG NKSNKLCDEK EASDPVVSWL LNGDDEATIG QSNCEKFGEP LDHDEENALV AWLLS
101: YIRKSHNVPA VTMNPPPTSQ RLPEKRRPGR TSRSAMKPKT HKPKTRKTKK TSAQPEPDAN VAINAVVGEE ALMMELSGAE ADLGPHCCNT NNNNNNNNNL
201: MSINGDNGVL SFDEHDIIDL LLDESDPGNV GSSETSNLEG NKSNKLCDEK EASDPVVSWL LNGDDEATIG QSNCEKFGEP LDHDEENALV AWLLS
001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
Arabidopsis Description
MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.