Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023486.1-P | Field mustard | nucleus | 94.95 | 100.0 |
| CDX91023 | Canola | nucleus | 97.47 | 97.47 |
| CDX69561 | Canola | nucleus | 91.92 | 92.39 |
| CDY09882 | Canola | nucleus | 91.92 | 91.92 |
| AT5G14750.1 | Thale cress | nucleus | 91.41 | 89.16 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 57.58 | 52.53 |
| CDX86461 | Canola | nucleus | 58.08 | 51.11 |
| CDY66972 | Canola | nucleus | 51.52 | 51.0 |
| CDY44571 | Canola | nucleus | 63.64 | 49.41 |
| CDY27055 | Canola | nucleus | 39.39 | 39.39 |
| CDY65324 | Canola | nucleus | 39.39 | 38.42 |
| CDY56151 | Canola | nucleus | 38.38 | 38.19 |
| CDY51833 | Canola | nucleus | 38.38 | 38.19 |
| CDY23616 | Canola | nucleus | 41.41 | 35.96 |
| CDX91687 | Canola | nucleus | 37.88 | 33.33 |
| CDY07085 | Canola | nucleus | 41.41 | 32.67 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 38.89 | 32.35 |
| CDY24177 | Canola | nucleus | 40.91 | 32.27 |
| CDY59254 | Canola | nucleus | 41.41 | 32.16 |
| CDY05057 | Canola | nucleus | 35.86 | 31.28 |
| CDX90721 | Canola | nucleus | 35.35 | 31.25 |
| CDY25747 | Canola | nucleus | 38.38 | 28.79 |
| CDY49363 | Canola | nucleus | 37.88 | 28.74 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 39.39 | 28.47 |
| CDX84119 | Canola | nucleus | 37.37 | 28.35 |
| CDY04798 | Canola | nucleus | 38.38 | 28.25 |
| CDY21378 | Canola | nucleus | 38.38 | 28.25 |
| CDY12520 | Canola | nucleus | 38.38 | 27.94 |
| CDX72510 | Canola | nucleus | 36.87 | 26.94 |
| CDY40652 | Canola | nucleus | 36.87 | 26.94 |
| CDX90285 | Canola | nucleus | 38.38 | 26.86 |
| CDX72743 | Canola | nucleus | 38.89 | 26.19 |
| CDY22416 | Canola | nucleus | 38.89 | 26.19 |
| CDY52797 | Canola | nucleus | 33.33 | 25.58 |
| CDX69102 | Canola | nucleus | 36.87 | 25.52 |
| CDX75478 | Canola | nucleus | 36.87 | 25.44 |
| CDY05636 | Canola | nucleus | 36.87 | 25.17 |
| CDY12092 | Canola | nucleus | 38.38 | 25.0 |
| CDY02243 | Canola | nucleus | 34.34 | 23.69 |
| CDY72116 | Canola | nucleus | 34.34 | 23.69 |
| CDY00035 | Canola | nucleus | 37.37 | 22.42 |
| CDX86237 | Canola | nucleus | 37.37 | 21.57 |
| CDX85403 | Canola | nucleus | 36.87 | 21.34 |
| CDY49609 | Canola | nucleus | 37.37 | 21.2 |
| CDX95725 | Canola | nucleus | 35.35 | 19.83 |
| CDX83327 | Canola | nucleus | 34.85 | 19.6 |
| CDY55384 | Canola | nucleus | 28.28 | 18.98 |
| CDX80105 | Canola | nucleus | 28.28 | 17.13 |
| CDY27486 | Canola | plastid | 4.55 | 3.81 |
Protein Annotations
| EnsemblPlants:CDX85583 | EnsemblPlantsGene:GSBRNA2T00143303001 | Gene3D:1.10.10.60 | GO:A0A078DE65 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF625 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX85583 | ProteinID:CDX85583.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDBEFF | MapMan:15.5.2.1 | : |
Description
BnaA02g02300D
Coordinates
chrLK031842:+:757471..758623
Molecular Weight (calculated)
22978.1 Da
IEP (calculated)
9.104
GRAVY (calculated)
-1.017
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKVSTSGE EGNNEYKKGL WTVEEDKILM DYVKAHGKGH WNRIAKKTGL KRCGKSCRLR WMNYLSPNVK RGNFTEQEED LIIRLHKLLG NRWSLIAKRV
101: PGRTDNQVKN YWNTHLSKKL GNKDPKTKPS NGDIVHQTSL TNPTETLEET NISNINDNSE IQEDRQGSNY LSSHWVHDDE FELSSLTNMM DFIDGHCF
101: PGRTDNQVKN YWNTHLSKKL GNKDPKTKPS NGDIVHQTSL TNPTETLEET NISNINDNSE IQEDRQGSNY LSSHWVHDDE FELSSLTNMM DFIDGHCF
001: MRKKVSSSGD EGNNEYKKGL WTVEEDKILM DYVKAHGKGH WNRIAKKTGL KRCGKSCRLR WMNYLSPNVK RGNFTEQEED LIIRLHKLLG NRWSLIAKRV
101: PGRTDNQVKN YWNTHLSKKL GIKDQKTKQS NGDIVYQINL PNPTETSEET KISNIVDNNN ILGDEIQEDH QGSNYLSSLW VHEDEFELST LTNMMDFIDG
201: HCF
101: PGRTDNQVKN YWNTHLSKKL GIKDQKTKQS NGDIVYQINL PNPTETSEET KISNIVDNNN ILGDEIQEDH QGSNYLSSLW VHEDEFELST LTNMMDFIDG
201: HCF
Arabidopsis Description
WERWER1 [Source:UniProtKB/TrEMBL;Acc:A0A178UJM1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.