Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95725 | Canola | nucleus | 94.32 | 94.05 |
| Bra000453.1-P | Field mustard | nucleus | 99.72 | 93.35 |
| KRH37017 | Soybean | nucleus | 41.19 | 43.41 |
| KRH11988 | Soybean | nucleus | 40.62 | 43.33 |
| KRH50769 | Soybean | nucleus | 41.19 | 43.03 |
| CDY55384 | Canola | nucleus | 35.51 | 42.37 |
| KRH02323 | Soybean | nucleus | 42.05 | 42.29 |
| CDX90721 | Canola | nucleus | 26.7 | 41.96 |
| CDY05057 | Canola | nucleus | 26.7 | 41.41 |
| AT3G62610.1 | Thale cress | nucleus | 40.06 | 41.11 |
| CDX91687 | Canola | nucleus | 25.85 | 40.44 |
| CDX80105 | Canola | nucleus | 36.08 | 38.84 |
| CDY05636 | Canola | nucleus | 31.25 | 37.93 |
| CDY40652 | Canola | nucleus | 28.69 | 37.27 |
| CDX72510 | Canola | nucleus | 28.69 | 37.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.52 | 36.88 |
| CDY07085 | Canola | nucleus | 25.28 | 35.46 |
| CDY24177 | Canola | nucleus | 25.28 | 35.46 |
| CDX90285 | Canola | nucleus | 28.41 | 35.34 |
| CDY25747 | Canola | nucleus | 26.42 | 35.23 |
| CDY23616 | Canola | nucleus | 22.73 | 35.09 |
| CDX69561 | Canola | nucleus | 19.6 | 35.03 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 31.82 | 34.89 |
| CDX91023 | Canola | nucleus | 19.6 | 34.85 |
| CDY27055 | Canola | nucleus | 19.6 | 34.85 |
| CDX85583 | Canola | nucleus | 19.6 | 34.85 |
| CDY09882 | Canola | nucleus | 19.6 | 34.85 |
| CDY21378 | Canola | nucleus | 26.42 | 34.57 |
| CDX85403 | Canola | nucleus | 33.52 | 34.5 |
| CDY49363 | Canola | nucleus | 25.57 | 34.48 |
| CDX84119 | Canola | nucleus | 25.57 | 34.48 |
| CDX86237 | Canola | nucleus | 33.52 | 34.4 |
| CDY00035 | Canola | nucleus | 32.1 | 34.24 |
| CDY04798 | Canola | nucleus | 26.14 | 34.2 |
| CDX75478 | Canola | nucleus | 27.84 | 34.15 |
| CDY65324 | Canola | nucleus | 19.6 | 33.99 |
| CDX69102 | Canola | nucleus | 27.56 | 33.92 |
| CDX72743 | Canola | nucleus | 28.12 | 33.67 |
| CDY22416 | Canola | nucleus | 28.12 | 33.67 |
| CDY12520 | Canola | nucleus | 25.85 | 33.46 |
| CDY59254 | Canola | nucleus | 23.86 | 32.94 |
| CDY12092 | Canola | nucleus | 28.41 | 32.89 |
| CDY52797 | Canola | nucleus | 23.86 | 32.56 |
| CDY66972 | Canola | nucleus | 18.47 | 32.5 |
| CDY49609 | Canola | nucleus | 32.1 | 32.38 |
| CDY56151 | Canola | nucleus | 18.18 | 32.16 |
| CDY51833 | Canola | nucleus | 18.18 | 32.16 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 33.81 | 32.08 |
| CDY72116 | Canola | nucleus | 25.57 | 31.36 |
| CDY02243 | Canola | nucleus | 25.57 | 31.36 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 32.1 | 29.5 |
| CDX86461 | Canola | nucleus | 18.75 | 29.33 |
| CDY44571 | Canola | nucleus | 19.6 | 27.06 |
| CDY27486 | Canola | plastid | 15.06 | 22.46 |
Protein Annotations
| EnsemblPlants:CDX83327 | EnsemblPlantsGene:GSBRNA2T00138889001 | Gene3D:1.10.10.60 | GO:A0A078D2H8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF203 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX83327 | ProteinID:CDX83327.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF40BE | MapMan:15.5.2.1 | : |
Description
BnaA03g21790D
Coordinates
chrLK031832:-:1072967..1076123
Molecular Weight (calculated)
39622.2 Da
IEP (calculated)
5.462
GRAVY (calculated)
-0.774
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKV GIKRGRWTAE EDQILSSYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TLEEEELVVK LHSTLGNRWS LIASHLPGRT
101: DNEIKNYWNS HLRRKLHNFI IRKPSISHNV PDVVINAPPR SPRPPTKRRP GRTSRSTMKP KTHHPNIRKM KKTSEPPEPE ASAAVKAGEE TLMMELNGAE
201: AELGPCNYYV TCHEGGACRN NNNNNSIDGD KGVSSFDEDI IDLLLDESAP SHVLTSCESI DCLQSCPSME SFLNYEHQVN NNAFTDEFID WDCVWQQGDD
301: NNIFDEKEGS DSMVSWLLDG EDEATIGKSN CENSGEPLDH DEENALVAWL LS
101: DNEIKNYWNS HLRRKLHNFI IRKPSISHNV PDVVINAPPR SPRPPTKRRP GRTSRSTMKP KTHHPNIRKM KKTSEPPEPE ASAAVKAGEE TLMMELNGAE
201: AELGPCNYYV TCHEGGACRN NNNNNSIDGD KGVSSFDEDI IDLLLDESAP SHVLTSCESI DCLQSCPSME SFLNYEHQVN NNAFTDEFID WDCVWQQGDD
301: NNIFDEKEGS DSMVSWLLDG EDEATIGKSN CENSGEPLDH DEENALVAWL LS
001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
Arabidopsis Description
MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.