Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037419.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX85403 | Canola | nucleus | 96.21 | 96.49 |
| CDY49609 | Canola | nucleus | 82.8 | 81.38 |
| CDY00035 | Canola | nucleus | 77.84 | 80.91 |
| AT5G49330.1 | Thale cress | nucleus | 80.17 | 80.41 |
| CDY05636 | Canola | nucleus | 62.68 | 74.14 |
| PGSC0003DMT400011167 | Potato | nucleus | 31.78 | 40.37 |
| CDX91687 | Canola | nucleus | 26.24 | 40.0 |
| CDX90721 | Canola | nucleus | 25.66 | 39.29 |
| Solyc06g009710.2.1 | Tomato | nucleus | 33.24 | 38.38 |
| CDY05057 | Canola | nucleus | 25.36 | 38.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.28 | 37.81 |
| CDX85583 | Canola | nucleus | 21.57 | 37.37 |
| PGSC0003DMT400018841 | Potato | nucleus | 32.94 | 37.29 |
| CDY55384 | Canola | nucleus | 32.07 | 37.29 |
| Solyc12g049350.1.1 | Tomato | nucleus | 31.78 | 37.2 |
| CDX69561 | Canola | nucleus | 21.28 | 37.06 |
| CDX91023 | Canola | nucleus | 21.28 | 36.87 |
| Solyc01g079620.2.1 | Tomato | nucleus | 35.86 | 36.39 |
| CDY09882 | Canola | nucleus | 20.99 | 36.36 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 39.07 | 36.12 |
| VIT_07s0005g01210.t01 | Wine grape | nucleus | 38.48 | 35.97 |
| CDY23616 | Canola | nucleus | 23.32 | 35.09 |
| CDY07085 | Canola | nucleus | 25.66 | 35.06 |
| CDY24177 | Canola | nucleus | 25.66 | 35.06 |
| CDX80105 | Canola | nucleus | 33.24 | 34.86 |
| PGSC0003DMT400023322 | Potato | nucleus | 36.44 | 34.44 |
| CDY27055 | Canola | nucleus | 19.83 | 34.34 |
| CDX83327 | Canola | nucleus | 34.4 | 33.52 |
| CDY65324 | Canola | nucleus | 19.83 | 33.5 |
| CDY04798 | Canola | nucleus | 26.24 | 33.46 |
| CDY21378 | Canola | nucleus | 26.24 | 33.46 |
| CDY25747 | Canola | nucleus | 25.66 | 33.33 |
| CDX72510 | Canola | nucleus | 26.24 | 33.21 |
| CDY40652 | Canola | nucleus | 26.24 | 33.21 |
| CDX95725 | Canola | nucleus | 33.82 | 32.86 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 30.32 | 32.4 |
| CDY12520 | Canola | nucleus | 25.66 | 32.35 |
| CDY59254 | Canola | nucleus | 23.91 | 32.16 |
| CDX90285 | Canola | nucleus | 26.24 | 31.8 |
| CDY56151 | Canola | nucleus | 18.37 | 31.66 |
| CDY66972 | Canola | nucleus | 18.37 | 31.5 |
| CDY51833 | Canola | nucleus | 18.08 | 31.16 |
| CDX69102 | Canola | nucleus | 25.66 | 30.77 |
| CDX86461 | Canola | nucleus | 20.12 | 30.67 |
| CDX75478 | Canola | nucleus | 25.66 | 30.66 |
| CDX84119 | Canola | nucleus | 23.32 | 30.65 |
| CDY22416 | Canola | nucleus | 26.24 | 30.61 |
| CDX72743 | Canola | nucleus | 26.24 | 30.61 |
| CDY72116 | Canola | nucleus | 25.36 | 30.31 |
| CDY02243 | Canola | nucleus | 25.36 | 30.31 |
| CDY49363 | Canola | nucleus | 22.74 | 29.89 |
| CDY12092 | Canola | nucleus | 25.95 | 29.28 |
| CDY52797 | Canola | nucleus | 20.99 | 27.91 |
| CDY44571 | Canola | nucleus | 20.41 | 27.45 |
| CDY27486 | Canola | plastid | 7.87 | 11.44 |
Protein Annotations
| EnsemblPlants:CDX86237 | EnsemblPlantsGene:GSBRNA2T00144338001 | Gene3D:1.10.10.60 | GO:A0A078DB14 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF203 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX86237 | ProteinID:CDX86237.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000253FA06 | MapMan:15.5.2.1 | : |
Description
BnaA06g29540D
Coordinates
chrLK031845:+:531087..534514
Molecular Weight (calculated)
38764.1 Da
IEP (calculated)
4.767
GRAVY (calculated)
-0.767
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKI GLKRGRWTAE EDEILTNYIQ TNGEGSWRSL PKKAGLLRCG KSCRLRWINY LRRDLKRGNI TAEEEETIVK LHSLLGNRWS HIATHLPGRT
101: DNEIKNYWNS HLSRKIYAFT TVTGDEHSLK VDDLVLNKSS SSSLGAKNTN KTKKKKGRTS RSSMKKHKQM VTASQCLPQP KELESEISEG WNSGNYEGKS
201: LGAYEWLDGE IERLMSSFVW ECASEEAVIS MNDDDPDQNK VCESGDNISC CVDLFEEEQG KLGSLHVDQD MNIEKEREES ILSSNSNESG DKDWWVGLCD
301: SSEVGFGIND ELLGWEFQGG LTCQTDDLWD LSDFGEIQQV DSI
101: DNEIKNYWNS HLSRKIYAFT TVTGDEHSLK VDDLVLNKSS SSSLGAKNTN KTKKKKGRTS RSSMKKHKQM VTASQCLPQP KELESEISEG WNSGNYEGKS
201: LGAYEWLDGE IERLMSSFVW ECASEEAVIS MNDDDPDQNK VCESGDNISC CVDLFEEEQG KLGSLHVDQD MNIEKEREES ILSSNSNESG DKDWWVGLCD
301: SSEVGFGIND ELLGWEFQGG LTCQTDDLWD LSDFGEIQQV DSI
001: MGRAPCCEKI GLKRGRWTAE EDEILTKYIQ TNGEGSWRSL PKKAGLLRCG KSCRLRWINY LRRDLKRGNI TSDEEEIIVK LHSLLGNRWS LIATHLPGRT
101: DNEIKNYWNS HLSRKIYAFT AVSGDGHNLL VNDVVLKKSC SSSSGAKNNN KTKKKKKGRT SRSSMKKHKQ MVTASQCFSQ PKELESDFSE GGQNGNFEGE
201: SLGPYEWLDG ELERLLSSCV WECTSEEAVI GVNDEKVCES GDNSSCCVNL FEEEQGSETK IGHVGITEVD HDMTVERERE GSFLSSNSNE NNDKDWWVGL
301: CNSSEVGFGV DEELLDWEFQ GNVTCQSDDL WDLSDIGEIT LE
101: DNEIKNYWNS HLSRKIYAFT AVSGDGHNLL VNDVVLKKSC SSSSGAKNNN KTKKKKKGRT SRSSMKKHKQ MVTASQCFSQ PKELESDFSE GGQNGNFEGE
201: SLGPYEWLDG ELERLLSSCV WECTSEEAVI GVNDEKVCES GDNSSCCVNL FEEEQGSETK IGHVGITEVD HDMTVERERE GSFLSSNSNE NNDKDWWVGL
301: CNSSEVGFGV DEELLDWEFQ GNVTCQSDDL WDLSDIGEIT LE
Arabidopsis Description
MYB111Transcription factor MYB111 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.