Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59254 | Canola | nucleus | 95.61 | 85.49 |
| Bra027423.1-P | Field mustard | nucleus | 95.18 | 85.1 |
| CDY24177 | Canola | nucleus | 85.96 | 78.09 |
| CDY07085 | Canola | nucleus | 85.96 | 78.09 |
| AT3G13540.1 | Thale cress | nucleus | 80.7 | 73.9 |
| GSMUA_Achr2P19380_001 | Banana | nucleus | 50.88 | 47.54 |
| GSMUA_Achr6P14840_001 | Banana | nucleus | 55.26 | 43.45 |
| Zm00001d011645_P001 | Maize | nucleus | 42.98 | 42.61 |
| GSMUA_Achr10P... | Banana | nucleus | 54.39 | 41.61 |
| CDX85583 | Canola | nucleus | 35.96 | 41.41 |
| CDX69561 | Canola | nucleus | 35.53 | 41.12 |
| CDX91023 | Canola | nucleus | 35.53 | 40.91 |
| VIT_06s0004g00570.t01 | Wine grape | nucleus, plastid | 55.7 | 40.71 |
| CDY09882 | Canola | nucleus | 35.09 | 40.4 |
| Os01t0695900-01 | Rice | nucleus | 48.25 | 40.0 |
| TraesCS3A01G257800.1 | Wheat | nucleus | 46.49 | 40.0 |
| VIT_08s0007g07230.t01 | Wine grape | nucleus | 55.7 | 39.69 |
| TraesCS3D01G257800.1 | Wheat | nucleus | 46.93 | 39.48 |
| TraesCS3B01G290600.1 | Wheat | nucleus | 46.93 | 39.34 |
| CDX91687 | Canola | nucleus | 38.6 | 39.11 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 44.74 | 38.06 |
| CDX90721 | Canola | nucleus | 36.84 | 37.5 |
| KXG33190 | Sorghum | nucleus | 46.05 | 37.5 |
| CDY27055 | Canola | nucleus | 32.46 | 37.37 |
| Solyc01g005660.1.1 | Tomato | nucleus, plastid | 50.44 | 37.34 |
| CDY51833 | Canola | nucleus | 32.46 | 37.19 |
| CDY05057 | Canola | nucleus | 36.4 | 36.56 |
| GSMUA_Achr7P13700_001 | Banana | nucleus | 49.12 | 36.48 |
| CDY65324 | Canola | nucleus | 32.46 | 36.45 |
| CDY56151 | Canola | nucleus | 31.58 | 36.18 |
| KRH17997 | Soybean | nucleus, plastid | 56.14 | 36.16 |
| CDY66972 | Canola | nucleus | 31.14 | 35.5 |
| KRH16413 | Soybean | nucleus | 56.14 | 35.46 |
| CDY25747 | Canola | nucleus | 39.04 | 33.71 |
| CDY21378 | Canola | nucleus | 39.47 | 33.46 |
| CDY12520 | Canola | nucleus | 39.47 | 33.09 |
| CDX86461 | Canola | nucleus | 32.46 | 32.89 |
| CDY04798 | Canola | nucleus | 38.6 | 32.71 |
| GSMUA_Achr5P06530_001 | Banana | nucleus | 53.07 | 32.27 |
| CDY44571 | Canola | nucleus | 35.96 | 32.16 |
| CDY40652 | Canola | nucleus | 36.84 | 31.0 |
| CDX72510 | Canola | nucleus | 36.84 | 31.0 |
| CDX90285 | Canola | nucleus | 38.16 | 30.74 |
| CDX84119 | Canola | nucleus | 34.65 | 30.27 |
| CDY49363 | Canola | nucleus | 34.65 | 30.27 |
| CDX69102 | Canola | nucleus | 37.72 | 30.07 |
| CDY72116 | Canola | nucleus | 37.72 | 29.97 |
| CDY02243 | Canola | nucleus | 37.72 | 29.97 |
| CDX75478 | Canola | nucleus | 37.72 | 29.97 |
| CDY22416 | Canola | nucleus | 37.72 | 29.25 |
| CDX72743 | Canola | nucleus | 37.72 | 29.25 |
| CDY05636 | Canola | nucleus | 36.4 | 28.62 |
| CDY12092 | Canola | nucleus | 37.72 | 28.29 |
| CDY52797 | Canola | nucleus | 30.7 | 27.13 |
| CDY00035 | Canola | nucleus | 33.77 | 23.33 |
| CDX86237 | Canola | nucleus | 35.09 | 23.32 |
| CDX95725 | Canola | nucleus | 35.96 | 23.23 |
| CDX85403 | Canola | nucleus | 34.65 | 23.1 |
| CDX83327 | Canola | nucleus | 35.09 | 22.73 |
| CDY49609 | Canola | nucleus | 34.21 | 22.35 |
| CDY55384 | Canola | nucleus | 26.75 | 20.68 |
| CDX80105 | Canola | nucleus | 28.07 | 19.57 |
| CDY27486 | Canola | plastid | 4.39 | 4.24 |
Protein Annotations
| EnsemblPlants:CDY23616 | EnsemblPlantsGene:GSBRNA2T00023834001 | Gene3D:1.10.10.60 | GO:A0A078GE35 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF942 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY23616 | ProteinID:CDY23616.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDF30C | UniProt:A0A078GE35 | MapMan:15.5.2.1 | : |
Description
BnaC05g39780DBnaC05g39780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE35]
Coordinates
chrLK032145:+:409942..411198
Molecular Weight (calculated)
25582.2 Da
IEP (calculated)
6.793
GRAVY (calculated)
-0.629
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMKRGPWTV EEDKILVSFI EKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG IAPDEEDLIL RLHRLIGNKW SLIAGRIPGR TDNEIKNYWN
101: THLRKKLLSQ GIDPQTHKPL DASYTRKPIE EVSGGQNLLE PNSNSHTDDT TVSSGSGAGK ISVSVFGDED FGFCYDDKFS SFLNSVINDD PFDSNIPILS
201: QPLQTHDFIG EIVGTSSSLG HDQRPEDI
101: THLRKKLLSQ GIDPQTHKPL DASYTRKPIE EVSGGQNLLE PNSNSHTDDT TVSSGSGAGK ISVSVFGDED FGFCYDDKFS SFLNSVINDD PFDSNIPILS
201: QPLQTHDFIG EIVGTSSSLG HDQRPEDI
001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
Arabidopsis Description
MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.