Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38620.1 | CDX86891 | AT4G09820.1 | 15361138 |
| AT4G38620.1 | CDX99505 | AT4G09820.1 | 15361138 |
| AT4G38620.1 | CDY65427 | AT4G25920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010736.1-P | Field mustard | nucleus | 90.13 | 96.82 |
| CDX90285 | Canola | nucleus | 89.8 | 96.47 |
| CDY52797 | Canola | nucleus | 78.95 | 93.02 |
| AT4G38620.1 | Thale cress | nucleus | 79.28 | 85.46 |
| CDX72743 | Canola | nucleus | 80.26 | 82.99 |
| CDY22416 | Canola | nucleus | 80.26 | 82.99 |
| GSMUA_Achr11P... | Banana | nucleus | 40.79 | 74.25 |
| GSMUA_Achr9P24180_001 | Banana | nucleus | 41.78 | 73.41 |
| GSMUA_Achr8P33900_001 | Banana | nucleus | 48.36 | 72.41 |
| Zm00001d022628_P001 | Maize | nucleus | 50.99 | 71.1 |
| KRH60702 | Soybean | nucleus | 48.68 | 70.48 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 45.07 | 70.26 |
| VIT_04s0023g03710.t01 | Wine grape | nucleus | 51.97 | 65.29 |
| KRH51400 | Soybean | nucleus | 50.0 | 64.68 |
| KRH29280 | Soybean | nucleus | 51.97 | 64.23 |
| Os09t0538400-01 | Rice | extracellular | 52.63 | 63.74 |
| Solyc01g111500.2.1 | Tomato | nucleus | 51.97 | 62.7 |
| GSMUA_Achr1P07550_001 | Banana | nucleus | 48.68 | 62.45 |
| TraesCS7D01G272400.1 | Wheat | nucleus | 48.03 | 62.39 |
| PGSC0003DMT400015803 | Potato | nucleus | 51.97 | 62.2 |
| TraesCS7B01G169900.1 | Wheat | nucleus | 48.03 | 62.13 |
| KRH24301 | Soybean | nucleus | 51.64 | 62.06 |
| HORVU7Hr1G057410.1 | Barley | nucleus | 48.03 | 61.34 |
| TraesCS7A01G272100.1 | Wheat | nucleus | 47.7 | 60.42 |
| EER99264 | Sorghum | nucleus | 52.3 | 60.23 |
| GSMUA_Achr1P26520_001 | Banana | nucleus | 47.04 | 59.34 |
| PGSC0003DMT400034372 | Potato | nucleus | 52.3 | 59.33 |
| Solyc10g055410.1.1 | Tomato | nucleus | 52.96 | 58.97 |
| TraesCS5B01G330100.1 | Wheat | nucleus | 50.66 | 58.56 |
| TraesCS5D01G335700.1 | Wheat | nucleus | 50.99 | 58.27 |
| TraesCS5A01G329900.1 | Wheat | nucleus | 50.99 | 57.84 |
| EES14116 | Sorghum | nucleus | 49.01 | 57.75 |
| CDX72510 | Canola | nucleus | 51.32 | 57.56 |
| Zm00001d006236_P002 | Maize | nucleus | 51.64 | 57.51 |
| CDY40652 | Canola | nucleus | 50.99 | 57.2 |
| HORVU5Hr1G083910.2 | Barley | nucleus | 50.33 | 56.88 |
| Zm00001d032024_P001 | Maize | nucleus | 47.37 | 56.69 |
| Zm00001d053220_P001 | Maize | nucleus | 48.03 | 56.15 |
| CDX75478 | Canola | nucleus | 52.63 | 55.75 |
| CDX69102 | Canola | nucleus | 51.97 | 55.24 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 34.87 | 55.21 |
| CDX91687 | Canola | nucleus | 40.79 | 55.11 |
| CDY02243 | Canola | nucleus | 50.66 | 53.66 |
| CDY72116 | Canola | nucleus | 50.66 | 53.66 |
| CDX90721 | Canola | nucleus | 39.47 | 53.57 |
| CDY05057 | Canola | nucleus | 39.14 | 52.42 |
| CDY04798 | Canola | nucleus | 44.41 | 50.19 |
| CDY21378 | Canola | nucleus | 44.08 | 49.81 |
| CDY25747 | Canola | nucleus | 42.11 | 48.48 |
| CDY12520 | Canola | nucleus | 42.11 | 47.06 |
| CDY27055 | Canola | nucleus | 26.32 | 40.4 |
| CDX69561 | Canola | nucleus | 25.66 | 39.59 |
| CDY65324 | Canola | nucleus | 26.32 | 39.41 |
| CDY09882 | Canola | nucleus | 25.33 | 38.89 |
| CDX85583 | Canola | nucleus | 25.0 | 38.38 |
| CDX91023 | Canola | nucleus | 25.0 | 38.38 |
| CDY23616 | Canola | nucleus | 28.29 | 37.72 |
| CDY56151 | Canola | nucleus | 24.34 | 37.19 |
| CDY51833 | Canola | nucleus | 24.34 | 37.19 |
| CDY07085 | Canola | nucleus | 30.59 | 37.05 |
| CDY24177 | Canola | nucleus | 30.26 | 36.65 |
| CDY59254 | Canola | nucleus | 29.93 | 35.69 |
| CDY49363 | Canola | nucleus | 28.95 | 33.72 |
| CDX84119 | Canola | nucleus | 28.95 | 33.72 |
| CDY66972 | Canola | nucleus | 21.71 | 33.0 |
| CDX86461 | Canola | nucleus | 23.03 | 31.11 |
| CDY05636 | Canola | nucleus | 27.96 | 29.31 |
| CDX83327 | Canola | nucleus | 32.89 | 28.41 |
| CDY44571 | Canola | nucleus | 23.68 | 28.24 |
| CDX95725 | Canola | nucleus | 32.24 | 27.76 |
| CDY00035 | Canola | nucleus | 29.93 | 27.58 |
| CDY49609 | Canola | nucleus | 29.93 | 26.07 |
| CDX85403 | Canola | nucleus | 29.28 | 26.02 |
| CDX86237 | Canola | nucleus | 29.28 | 25.95 |
| CDY55384 | Canola | nucleus | 22.7 | 23.39 |
| CDX80105 | Canola | nucleus | 23.03 | 21.41 |
| CDY27486 | Canola | plastid | 4.93 | 6.36 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078FGK9 | UniProt:A0A078FGK9 | EnsemblPlants:CDY12092 | ProteinID:CDY12092 |
| ProteinID:CDY12092.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00061063001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF741 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EED23E | SEG:seg |
Description
BnaC03g60080DBnaC03g60080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGK9]
Coordinates
chrLK032017:+:430366..431964
Molecular Weight (calculated)
34375.3 Da
IEP (calculated)
9.175
GRAVY (calculated)
-0.617
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVRFSYQEI IRSKHRKQKE KSMGRSPCCE KAHTNKGAWT KEEDARLTAY IKAHGEGCWR SLPKAAGLLR CGKSCRLRWI NYLRPDLKRG NFTEDEDELI
101: IKLHSLLGNK WSLIAGRLPG RTDNEIKNYW NTHIRRKLIN RGIDPTTHRP VQESSSASQD SKPTQLAEAI TSNNTINISF TNTPKMESTS CFQVKPEKIS
201: MLTFKEEKDE FLIEEKLPDL NLELRISLPD VVEGKSTRER CFKCSLGMIN GMECRCGSMR CDVVGGSSGS TGKGGDISHG FDFLGLATKE TTTSLLGFRS
301: LEMI
101: IKLHSLLGNK WSLIAGRLPG RTDNEIKNYW NTHIRRKLIN RGIDPTTHRP VQESSSASQD SKPTQLAEAI TSNNTINISF TNTPKMESTS CFQVKPEKIS
201: MLTFKEEKDE FLIEEKLPDL NLELRISLPD VVEGKSTRER CFKCSLGMIN GMECRCGSMR CDVVGGSSGS TGKGGDISHG FDFLGLATKE TTTSLLGFRS
301: LEMI
001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK
Arabidopsis Description
MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.