Factsheet for Os09t0538400-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 25047395

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022628_P001	Maize	nucleus	78.49	90.37
EER99264	Sorghum	nucleus	85.26	81.06
TraesCS5B01G330100.1	Wheat	nucleus	81.27	77.57
TraesCS5D01G335700.1	Wheat	nucleus	82.07	77.44
TraesCS5A01G329900.1	Wheat	nucleus	81.27	76.12
HORVU5Hr1G083910.2	Barley	nucleus	80.88	75.46
KRH60702	Soybean	nucleus	61.35	73.33
KRH51400	Soybean	nucleus	63.74	68.09
VIT_03s0038g02310.t01	Wine grape	nucleus	67.33	67.33
KRH29280	Soybean	nucleus	62.95	64.23
Solyc01g111500.2.1	Tomato	nucleus	64.14	63.89
PGSC0003DMT400015803	Potato	nucleus	64.14	63.39
KRH24301	Soybean	nucleus	63.35	62.85
PGSC0003DMT400034372	Potato	nucleus	64.94	60.82
Solyc10g055410.1.1	Tomato	nucleus	66.14	60.81
AT4G38620.1	Thale cress	nucleus	64.54	57.45
Bra010736.1-P	Field mustard	nucleus	63.74	56.54
CDX90285	Canola	nucleus	63.74	56.54
CDY22416	Canola	nucleus	64.14	54.76
CDX72743	Canola	nucleus	64.14	54.76
Bra033572.1-P	Field mustard	nucleus	64.14	54.76
Os05t0429900-01	Rice	nucleus	55.78	53.85
CDY52797	Canola	nucleus	54.58	53.1
CDY12092	Canola	nucleus	63.74	52.63
Os01t0874300-01	Rice	extracellular, nucleus	57.37	50.17
Os11t0180900-00	Rice	nucleus	56.18	47.8
Os01t0695900-01	Rice	nucleus	32.67	29.82
Os01t0305900-01	Rice	nucleus	35.46	28.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:4347711	EMBL:AK104408	EMBL:AK104457	EMBL:AK111966
ProteinID:BAD34380.1	ProteinID:BAF25710.1	ProteinID:BAT09173.1	ProteinID:EAZ45501.1	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
EMBL:HQ858827	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os09g0538400	EnsemblPlants:Os09t0538400-01
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF741	UniProt:Q69JE8	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00003FF5B1	RefSeq:XP_015612022.1	SEG:seg	:

Description

R2R3-MYBSimilar to P-type R2R3 Myb protein (Fragment). (Os09t0538400-01)

Coordinates

chr9:-:21189530..21190738

Molecular Weight (calculated)

28226.0 Da

IEP (calculated)

8.910

GRAVY (calculated)

-0.543

Length

251 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDDRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLLSRG IDPVTHRPIN DSASNITISF EAAAAAARDD KAAVFRREDH PHQPKAVTVA QEQQAAADWG HGKPLKCPDL NLDLCISLPS
201: QEEPMMMKPV KRETGVCFSC SLGLPKSTDC KCSSFLGLRT AMLDFRSLEM K

Best Arabidopsis Sequence Match ( AT4G38620.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK

Arabidopsis Description

MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.