Factsheet for Bra023486.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004539.1-P
Bra027653.1-P
Bra027796.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14750.1	Bra027653.1-P	AT1G63650.1	14627722
AT5G14750.1	Bra027796.1-P	AT1G63650.1	14627722
AT5G14750.1	Bra027653.1-P	AT1G63650.1	15361138
AT5G14750.1	Bra027796.1-P	AT1G63650.1	15361138
AT5G14750.1	Bra027653.1-P	AT1G63650.1	17644729
AT5G14750.1	Bra027796.1-P	AT1G63650.1	17644729
AT5G14750.1	Bra004539.1-P	AT2G46410.1	17644729

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85583	Canola	nucleus	100.0	94.95
CDX91023	Canola	nucleus	97.34	92.42
Bra008740.1-P	Field mustard	nucleus	91.49	87.31
AT5G14750.1	Thale cress	nucleus	90.96	84.24
VIT_14s0066g01220.t01	Wine grape	nucleus	55.85	48.39
Bra025311.1-P	Field mustard	nucleus	57.45	48.0
Bra039065.1-P	Field mustard	nucleus	50.0	47.24
Bra025589.1-P	Field mustard	nucleus	61.7	45.49
Bra022602.1-P	Field mustard	nucleus	39.89	37.88
Bra029113.1-P	Field mustard	nucleus	38.83	36.68
Bra039395.1-P	Field mustard	nucleus	41.49	31.08
GSMUA_Achr3P07950_001	Banana	nucleus	38.83	30.67
Bra027423.1-P	Field mustard	nucleus	41.49	30.59
Bra000680.1-P	Field mustard	nucleus	35.64	29.91
Bra035532.1-P	Field mustard	nucleus	38.83	28.08
GSMUA_Achr3P27700_001	Banana	nucleus	40.43	27.74
Bra024526.1-P	Field mustard	nucleus	39.36	27.51
Bra012337.1-P	Field mustard	nucleus	39.36	26.81
Bra017685.1-P	Field mustard	nucleus	37.77	26.2
Bra010736.1-P	Field mustard	nucleus	38.83	25.8
Bra033572.1-P	Field mustard	nucleus	39.36	25.17
Bra011576.1-P	Field mustard	nucleus	37.77	24.74
Bra013055.1-P	Field mustard	nucleus	35.11	22.92
Bra037419.1-P	Field mustard	nucleus	37.23	20.41
Bra036145.1-P	Field mustard	nucleus	37.23	20.17
Bra000453.1-P	Field mustard	nucleus	35.11	17.55
Bra004456.1-P	Field mustard	nucleus	28.19	14.52

Protein Annotations

EnsemblPlants:Bra023486.1	EnsemblPlants:Bra023486.1-P	EnsemblPlantsGene:Bra023486	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF625	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00025435D7	UniProt:M4E3Y3	MapMan:15.5.2.1	:	:

Description

AT5G14750 (E=2e-065) WER, ATMYB66, WER1 | ATMYB66 (MYB DOMAIN PROTEIN 66); DNA binding / protein binding / transcription factor/ transcription regulator

Coordinates

chrA02:-:3580678..3581830

Molecular Weight (calculated)

21785.6 Da

IEP (calculated)

8.097

GRAVY (calculated)

-0.993

Length

188 amino acids

Sequence
(BLAST)

001: MRKKVSTSGE EGNNEYKKGL WTVEEDKILM DYVKAHGKGL KRCGKSCRLR WMNYLSPNVK RGNFTEQEED LIIRLHKLLG NRWSLIAKRV PGRTDNQVKN
101: YWNTHLSKKL GNKDPKTKPS NGDIVHQTSL TNPTETLEET NISNINDNSE IQEDRQGSNY LSSHWVHDDE FELSSLTNMM DFIDGHCF

Best Arabidopsis Sequence Match ( AT5G14750.1 )
(BLAST)

001: MRKKVSSSGD EGNNEYKKGL WTVEEDKILM DYVKAHGKGH WNRIAKKTGL KRCGKSCRLR WMNYLSPNVK RGNFTEQEED LIIRLHKLLG NRWSLIAKRV
101: PGRTDNQVKN YWNTHLSKKL GIKDQKTKQS NGDIVYQINL PNPTETSEET KISNIVDNNN ILGDEIQEDH QGSNYLSSLW VHEDEFELST LTNMMDFIDG
201: HCF

Arabidopsis Description

WERWER1 [Source:UniProtKB/TrEMBL;Acc:A0A178UJM1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.