Factsheet for Bra025589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027653.1-P
Bra027796.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40330.1	Bra027653.1-P	AT1G63650.1	15361138
AT5G40330.1	Bra027796.1-P	AT1G63650.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44571	Canola	nucleus	99.22	99.22
AT5G40330.1	Thale cress	nucleus	69.41	80.82
Bra008740.1-P	Field mustard	nucleus	49.8	64.47
Bra023486.1-P	Field mustard	nucleus	45.49	61.7
Bra025311.1-P	Field mustard	nucleus	48.24	54.67
Bra039065.1-P	Field mustard	nucleus	42.35	54.27
VIT_14s0066g01220.t01	Wine grape	nucleus	44.31	52.07
Bra022602.1-P	Field mustard	nucleus	29.02	37.37
Bra029113.1-P	Field mustard	nucleus	28.63	36.68
Bra039395.1-P	Field mustard	nucleus	33.73	34.26
Bra027423.1-P	Field mustard	nucleus	32.55	32.55
GSMUA_Achr3P07950_001	Banana	nucleus	29.8	31.93
Bra000680.1-P	Field mustard	nucleus	27.84	31.7
GSMUA_Achr3P27700_001	Banana	nucleus	29.8	27.74
Bra024526.1-P	Field mustard	nucleus	29.02	27.51
Bra035532.1-P	Field mustard	nucleus	27.84	27.31
Bra012337.1-P	Field mustard	nucleus	29.41	27.17
Bra010736.1-P	Field mustard	nucleus	29.02	26.15
Bra017685.1-P	Field mustard	nucleus	27.06	25.46
Bra033572.1-P	Field mustard	nucleus	29.02	25.17
Bra011576.1-P	Field mustard	nucleus	27.06	24.04
Bra013055.1-P	Field mustard	nucleus	26.27	23.26
Bra037419.1-P	Field mustard	nucleus	27.45	20.41
Bra036145.1-P	Field mustard	nucleus	27.06	19.88
Bra000453.1-P	Field mustard	nucleus	27.06	18.35
Bra004456.1-P	Field mustard	nucleus	18.82	13.15

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra025589	EnsemblPlants:Bra025589.1	EnsemblPlants:Bra025589.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0010026
GO:GO:0010053	GO:GO:0010091	GO:GO:0016043	GO:GO:0030154	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:M4E9Y2	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF625
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002544D25	SEG:seg	:

Description

AT5G40330 (E=3e-068) MYB23, ATMYB23, ATMYBRTF | MYB23 (MYB DOMAIN PROTEIN 23); DNA binding / protein binding / transcription factor

Coordinates

chrA04:+:7664507..7667255

Molecular Weight (calculated)

29276.6 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.621

Length

255 amino acids

Sequence
(BLAST)

001: MYRLRSCHSS DNYIYSIEIH LFESSDQKSH SVLRREYKKG LWTVEEDKIL MDYVRTHGQG HWNRIAKKTG LKRCGKSCRL RWMNYLSPSV NRGNFTDQEE
101: DLIIRLHKLL GNRWSLIAKR VPGRTDNQVK NYWNTHLSKK LGLGDHSYEA KPACDTETPA SLVITTTKTS SPPSLVVTTT TSHQDVGDEK VSTIRFDTTD
201: DDSKLNTKSK PVYSIQPDVE VAATIPNLFD TFWVLEDNFD LSSLTMMDFA NGYCL

Best Arabidopsis Sequence Match ( AT5G40330.1 )
(BLAST)

001: MRMTRDGKEH EYKKGLWTVE EDKILMDYVR THGQGHWNRI AKKTGLKRCG KSCRLRWMNY LSPNVNRGNF TDQEEDLIIR LHKLLGNRWS LIAKRVPGRT
101: DNQVKNYWNT HLSKKLGLGD HSTAVKAACG VESPPSMALI TTTSSSHQEI SGGKNSTLRF DTLVDESKLK PKSKLVHATP TDVEVAATVP NLFDTFWVLE
201: DDFELSSLTM MDFTNGYCL

Arabidopsis Description

MYB23Transcription factor MYB23 [Source:UniProtKB/Swiss-Prot;Acc:Q96276]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.