Factsheet for Bra000680.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90721	Canola	nucleus	100.0	100.0
CDY05057	Canola	nucleus	95.98	94.71
AT4G09460.1	Thale cress	nucleus	83.93	79.66
GSMUA_AchrUn_...	Banana	nucleus	50.45	75.84
AT1G35515.1	Thale cress	nucleus	65.18	68.87
GSMUA_Achr2P20600_001	Banana	nucleus	52.68	67.43
GSMUA_Achr6P07260_001	Banana	mitochondrion	52.68	59.3
GSMUA_Achr10P...	Banana	nucleus	54.46	56.22
GSMUA_Achr8P32480_001	Banana	nucleus	49.55	55.5
GSMUA_Achr3P22200_001	Banana	nucleus	53.12	54.84
EES16743	Sorghum	nucleus	51.79	53.95
GSMUA_Achr5P26000_001	Banana	nucleus	49.55	52.86
Zm00001d041853_P001	Maize	nucleus	51.79	51.33
GSMUA_Achr6P25420_001	Banana	nucleus	53.12	50.21
TraesCS1A01G268800.1	Wheat	nucleus	54.46	49.39
GSMUA_Achr5P17010_001	Banana	nucleus	53.12	49.38
TraesCS1D01G268900.1	Wheat	nucleus	54.02	48.99
HORVU1Hr1G074260.1	Barley	nucleus	54.46	48.61
TraesCS1B01G279400.1	Wheat	nucleus	53.57	48.58
TraesCS5A01G111300.1	Wheat	nucleus	52.68	48.36
Zm00001d012255_P001	Maize	nucleus	54.02	48.21
Os05t0429900-01	Rice	nucleus	55.8	48.08
Bra024526.1-P	Field mustard	nucleus	57.14	47.58
Zm00001d042665_P001	Maize	nucleus	55.36	47.33
Zm00001d010201_P001	Maize	nucleus	51.79	46.59
Zm00001d038338_P001	Maize	nucleus	52.68	45.74
EES01839	Sorghum	nucleus	54.91	45.72
KXG22070	Sorghum	nucleus	53.12	45.42
Bra012337.1-P	Field mustard	nucleus	55.8	45.29
HORVU5Hr1G036900.1	Barley	nucleus	53.12	45.08
TraesCS3A01G384400.1	Wheat	nucleus	53.57	44.94
GSMUA_Achr9P08600_001	Banana	nucleus	54.46	44.85
TraesCS3B01G416400.1	Wheat	nucleus	52.68	44.19
HORVU3Hr1G082210.1	Barley	nucleus	53.12	44.07
TraesCS3D01G377300.1	Wheat	nucleus	53.12	43.91
Bra017685.1-P	Field mustard	nucleus	53.12	43.91
Solyc06g065100.2.1	Tomato	nucleus	54.46	43.73
Zm00001d004744_P001	Maize	nucleus	53.57	43.64
GSMUA_Achr5P01180_001	Banana	nucleus	50.45	43.46
TraesCS5B01G119300.1	Wheat	nucleus	52.68	43.38
Os01t0874300-01	Rice	extracellular, nucleus	54.91	42.86
PGSC0003DMT400080427	Potato	nucleus	54.46	42.81
Bra010736.1-P	Field mustard	nucleus	53.57	42.4
GSMUA_Achr10P...	Banana	nucleus	53.57	42.25
GSMUA_Achr6P12930_001	Banana	nucleus	53.57	41.96
Bra033572.1-P	Field mustard	nucleus	54.91	41.84
TraesCS4A01G217800.1	Wheat	nucleus	53.57	41.67
TraesCS4D01G092900.1	Wheat	nucleus	53.57	41.52
Bra011576.1-P	Field mustard	nucleus	53.12	41.46
OQU78830	Sorghum	nucleus	51.34	40.78
Zm00001d053060_P001	Maize	nucleus	51.79	40.28
Bra013055.1-P	Field mustard	nucleus	51.79	40.28
Os11t0180900-00	Rice	nucleus	52.68	40.0
TraesCS5D01G128200.2	Wheat	nucleus	52.68	38.56
OQU83016	Sorghum	nucleus	52.23	37.14
Bra008740.1-P	Field mustard	nucleus	32.59	37.06
Bra023486.1-P	Field mustard	nucleus	29.91	35.64
Bra022602.1-P	Field mustard	nucleus	31.25	35.35
Bra039395.1-P	Field mustard	nucleus	39.29	35.06
Bra027423.1-P	Field mustard	nucleus	38.84	34.12
Bra029113.1-P	Field mustard	nucleus	29.46	33.17
HORVU4Hr1G018360.2	Barley	nucleus	53.57	32.88
Bra035532.1-P	Field mustard	nucleus	37.95	32.69
TraesCS4B01G096500.1	Wheat	nucleus, plastid	54.02	31.76
Bra025311.1-P	Field mustard	nucleus	29.91	29.78
Bra039065.1-P	Field mustard	nucleus	25.0	28.14
Bra025589.1-P	Field mustard	nucleus	31.7	27.84
Bra036145.1-P	Field mustard	nucleus	40.62	26.22
Bra037419.1-P	Field mustard	nucleus	39.29	25.66
Bra000453.1-P	Field mustard	nucleus	41.96	25.0
Bra004456.1-P	Field mustard	nucleus	32.14	19.73

Protein Annotations

EnsemblPlants:Bra000680.1	EnsemblPlants:Bra000680.1-P	EnsemblPlantsGene:Bra000680	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF947	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00025402F0	UniProt:M4C902	MapMan:15.5.2.1	:	:

Description

AT4G09460 (E=8e-074) ATMYB6 | ATMYB6; DNA binding / transcription factor

Coordinates

chrA03:+:12417252..12418112

Molecular Weight (calculated)

25012.4 Da

IEP (calculated)

9.454

GRAVY (calculated)

-0.799

Length

224 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR IHGEGSWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF SDEEDKVIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRPIK DSIAVENSFT VRPKTENSSG NVASTSGTTT DEDIRQNGDC YYNDNSGEKE VNLDLTLGSG STSLVRSGGR
201: SGNGSSADSK PWWDPVMAAR LSLL

Best Arabidopsis Sequence Match ( AT4G09460.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL

Arabidopsis Description

MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.