Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G092900.1 | Wheat | nucleus | 72.05 | 91.0 |
| TraesCS4A01G217800.1 | Wheat | nucleus | 71.78 | 90.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.15 | 81.21 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 79.73 | 76.38 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 34.79 | 72.57 |
| Os11t0180900-00 | Rice | nucleus | 57.26 | 70.85 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 36.16 | 66.33 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 38.63 | 64.98 |
| GSMUA_Achr10P... | Banana | nucleus | 37.53 | 63.13 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 36.16 | 62.86 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 39.73 | 61.18 |
| Zm00001d004744_P001 | Maize | nucleus | 46.03 | 61.09 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 33.42 | 61.0 |
| Zm00001d053060_P001 | Maize | nucleus | 47.67 | 60.42 |
| HORVU1Hr1G074260.1 | Barley | nucleus | 39.73 | 57.77 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 37.53 | 56.85 |
| AT1G35515.1 | Thale cress | nucleus | 32.33 | 55.66 |
| OQU83016 | Sorghum | nucleus | 47.67 | 55.24 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 41.1 | 55.15 |
| HORVU5Hr1G036900.1 | Barley | nucleus | 39.73 | 54.92 |
| CDX90721 | Canola | nucleus | 32.88 | 53.57 |
| Bra000680.1-P | Field mustard | nucleus | 32.88 | 53.57 |
| HORVU7Hr1G057410.1 | Barley | nucleus | 34.79 | 53.36 |
| HORVU3Hr1G082210.1 | Barley | nucleus | 39.45 | 53.33 |
| AT4G09460.1 | Thale cress | nucleus | 34.25 | 52.97 |
| CDY05057 | Canola | nucleus | 32.6 | 52.42 |
| HORVU5Hr1G083910.2 | Barley | nucleus | 38.36 | 52.04 |
| Solyc06g065100.2.1 | Tomato | nucleus | 38.08 | 49.82 |
| PGSC0003DMT400080427 | Potato | nucleus | 38.63 | 49.47 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 37.81 | 48.25 |
| KRH54016 | Soybean | nucleus | 38.63 | 46.84 |
| KRH63931 | Soybean | nucleus | 38.63 | 46.69 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 36.99 | 46.55 |
| HORVU3Hr1G100500.1 | Barley | nucleus | 24.66 | 35.29 |
| HORVU0Hr1G006810.2 | Barley | nucleus | 23.56 | 32.09 |
| HORVU4Hr1G063760.1 | Barley | nucleus | 19.73 | 31.17 |
| HORVU4Hr1G082610.1 | Barley | nucleus | 22.19 | 30.92 |
| HORVU7Hr1G034630.1 | Barley | nucleus | 22.47 | 30.6 |
| HORVU4Hr1G054420.3 | Barley | nucleus | 24.38 | 26.18 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G018360.2 | EnsemblPlantsGene:HORVU4Hr1G018360 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF951 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000B47245B | UniProt:A0A287NFG8 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:83586966..83589685
Molecular Weight (calculated)
39482.0 Da
IEP (calculated)
9.836
GRAVY (calculated)
-0.463
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: LSLLLPRSLS KSSLALALAR TTNNAPLLPL LSRTPTPTPH QSVTRVRRAA AATVYVGYVP AAGMGRSPCC EKAHTNKGAW TKEEDQRLVA YIKAHGEGCW
101: RSLPKAAGLL RCGKSCRLRW INYLRPDLKR GNFTEEEDEL IIKLHELLGN KWSLIAGRLP GRTDNEIKNY WNTHIKRKLL ARGMDPHTHR PLNAVAAAAM
201: PQQLRAVHER HFAAAAQAAG GHHLQPQQQD HLAALSSCSA EPACSHSSDD EPAGSATPPP PSRRHLSIDL NLSISLAPYQ QPGDDPAAVK QEAASTASHT
301: HNATTSTSAV CLCLNRLGFQ RPGEGCRCGA AAASSSVPMQ QQQQQQQAST QRMFRFTAPL EGGGL
101: RSLPKAAGLL RCGKSCRLRW INYLRPDLKR GNFTEEEDEL IIKLHELLGN KWSLIAGRLP GRTDNEIKNY WNTHIKRKLL ARGMDPHTHR PLNAVAAAAM
201: PQQLRAVHER HFAAAAQAAG GHHLQPQQQD HLAALSSCSA EPACSHSSDD EPAGSATPPP PSRRHLSIDL NLSISLAPYQ QPGDDPAAVK QEAASTASHT
301: HNATTSTSAV CLCLNRLGFQ RPGEGCRCGA AAASSSVPMQ QQQQQQQAST QRMFRFTAPL EGGGL
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.