Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90721 | Canola | nucleus | 79.66 | 83.93 |
| Bra000680.1-P | Field mustard | nucleus | 79.66 | 83.93 |
| CDY05057 | Canola | nucleus | 80.08 | 83.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.73 | 77.18 |
| AT1G35515.1 | Thale cress | nucleus | 63.56 | 70.75 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 50.0 | 67.43 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 49.58 | 58.79 |
| GSMUA_Achr10P... | Banana | nucleus | 51.69 | 56.22 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 47.46 | 56.0 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 51.27 | 55.76 |
| EES16743 | Sorghum | nucleus | 50.42 | 55.35 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 48.31 | 54.29 |
| Zm00001d041853_P001 | Maize | nucleus | 50.0 | 52.21 |
| AT1G22640.1 | Thale cress | nucleus | 55.51 | 50.97 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 50.42 | 50.21 |
| TraesCS1B01G279400.1 | Wheat | nucleus | 52.54 | 50.2 |
| TraesCS1D01G268900.1 | Wheat | nucleus | 52.12 | 49.8 |
| TraesCS1A01G268800.1 | Wheat | nucleus | 51.69 | 49.39 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 50.42 | 49.38 |
| Zm00001d042665_P001 | Maize | nucleus | 54.66 | 49.24 |
| Zm00001d012255_P001 | Maize | nucleus | 52.12 | 49.0 |
| HORVU1Hr1G074260.1 | Barley | nucleus | 51.69 | 48.61 |
| Os05t0429900-01 | Rice | nucleus | 53.39 | 48.46 |
| Zm00001d010201_P001 | Maize | nucleus | 50.85 | 48.19 |
| KXG22070 | Sorghum | nucleus | 53.39 | 48.09 |
| TraesCS5A01G111300.1 | Wheat | nucleus | 49.58 | 47.95 |
| EES01839 | Sorghum | nucleus | 53.81 | 47.21 |
| Zm00001d038338_P001 | Maize | nucleus | 51.27 | 46.9 |
| AT2G16720.1 | Thale cress | nucleus | 52.54 | 46.1 |
| TraesCS3A01G384400.1 | Wheat | nucleus | 52.12 | 46.07 |
| TraesCS3B01G416400.1 | Wheat | nucleus | 51.27 | 45.32 |
| HORVU3Hr1G082210.1 | Barley | nucleus | 51.69 | 45.19 |
| HORVU5Hr1G036900.1 | Barley | nucleus | 50.42 | 45.08 |
| TraesCS3D01G377300.1 | Wheat | nucleus | 51.69 | 45.02 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 51.69 | 44.85 |
| Solyc06g065100.2.1 | Tomato | nucleus | 52.97 | 44.8 |
| AT4G38620.1 | Thale cress | nucleus | 52.97 | 44.33 |
| Os01t0874300-01 | Rice | extracellular, nucleus | 53.81 | 44.25 |
| AT4G34990.1 | Thale cress | nucleus | 51.27 | 44.16 |
| PGSC0003DMT400080427 | Potato | nucleus | 52.97 | 43.86 |
| TraesCS5B01G119300.1 | Wheat | nucleus | 50.42 | 43.75 |
| Zm00001d004744_P001 | Maize | nucleus | 50.42 | 43.27 |
| TraesCS4A01G217800.1 | Wheat | nucleus | 52.54 | 43.06 |
| TraesCS4D01G092900.1 | Wheat | nucleus | 52.54 | 42.91 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 47.03 | 42.69 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 51.69 | 42.66 |
| OQU78830 | Sorghum | nucleus | 49.58 | 41.49 |
| Zm00001d053060_P001 | Maize | nucleus | 50.42 | 41.32 |
| GSMUA_Achr10P... | Banana | nucleus | 49.58 | 41.2 |
| Os11t0180900-00 | Rice | nucleus | 50.85 | 40.68 |
| TraesCS5D01G128200.2 | Wheat | nucleus | 50.42 | 38.89 |
| OQU83016 | Sorghum | nucleus | 50.0 | 37.46 |
| AT5G14750.1 | Thale cress | nucleus | 31.36 | 36.45 |
| AT3G13540.1 | Thale cress | nucleus | 36.86 | 34.94 |
| HORVU4Hr1G018360.2 | Barley | nucleus | 52.97 | 34.25 |
| AT5G52600.1 | Thale cress | nucleus | 28.39 | 33.33 |
| AT5G40330.1 | Thale cress | nucleus | 30.93 | 33.33 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 52.54 | 32.55 |
| AT3G27920.1 | Thale cress | nucleus | 30.08 | 31.14 |
| AT5G35550.2 | Thale cress | nucleus | 30.51 | 27.59 |
| AT3G62610.1 | Thale cress | nucleus | 38.98 | 26.82 |
| AT5G49330.1 | Thale cress | nucleus | 38.56 | 26.61 |
| AT2G47460.1 | Thale cress | nucleus | 38.56 | 24.53 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:826530 | UniProt:A0A178UZB8 | ProteinID:AEE82750.1 | ArrayExpress:AT4G09460 |
| EnsemblPlantsGene:AT4G09460 | RefSeq:AT4G09460 | TAIR:AT4G09460 | RefSeq:AT4G09460-TAIR-G | EnsemblPlants:AT4G09460.1 | TAIR:AT4G09460.1 |
| EMBL:AY086813 | EMBL:AY519604 | Unigene:At.4218 | Symbol:AtMYB6 | EMBL:BT004171 | EMBL:BT005085 |
| ProteinID:CAB78069.1 | ncoils:Coil | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | RefSeq:NP_192684.1 | ProteinID:OAO99258.1 | PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF947 | UniProt:Q38851 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| EMBL:U26936 | UniParc:UPI000000C2C0 | EMBL:Z95782 | : | : | : |
Description
MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
Coordinates
chr4:+:5992908..5994258
Molecular Weight (calculated)
26475.1 Da
IEP (calculated)
8.481
GRAVY (calculated)
-0.705
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.