Factsheet for Bra039395.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027653.1-P
Bra027796.1-P
Bra037887.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13540.1	Bra027653.1-P	AT1G63650.1	15361138
AT3G13540.1	Bra027796.1-P	AT1G63650.1	15361138
AT3G13540.1	Bra037887.1-P	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07085	Canola	nucleus	98.8	98.8
Bra027423.1-P	Field mustard	nucleus	83.27	81.96
AT3G13540.1	Thale cress	nucleus	79.68	80.32
GSMUA_Achr2P19380_001	Banana	nucleus	45.82	47.13
GSMUA_Achr6P14840_001	Banana	nucleus	52.59	45.52
Zm00001d011645_P001	Maize	nucleus	39.84	43.48
GSMUA_Achr10P...	Banana	nucleus	51.39	43.29
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	51.79	41.67
Bra008740.1-P	Field mustard	nucleus	32.67	41.62
Bra023486.1-P	Field mustard	nucleus	31.08	41.49
TraesCS3A01G257800.1	Wheat	nucleus	43.43	41.13
VIT_08s0007g07230.t01	Wine grape	nucleus	52.19	40.94
TraesCS3D01G257800.1	Wheat	nucleus	43.82	40.59
TraesCS3B01G290600.1	Wheat	nucleus	43.43	40.07
Bra022602.1-P	Field mustard	nucleus	31.47	39.9
Solyc01g005660.1.1	Tomato	nucleus, plastid	48.61	39.61
Bra000680.1-P	Field mustard	nucleus	35.06	39.29
HORVU0Hr1G006810.2	Barley	nucleus	41.83	39.18
Os01t0695900-01	Rice	nucleus	42.63	38.91
KXG33190	Sorghum	nucleus	42.63	38.21
GSMUA_Achr7P13700_001	Banana	nucleus	46.22	37.78
KRH17997	Soybean	nucleus, plastid	52.99	37.57
Bra029113.1-P	Field mustard	nucleus	29.48	37.19
KRH16413	Soybean	nucleus	51.79	36.01
GSMUA_Achr5P06530_001	Banana	nucleus	51.39	34.4
Bra025311.1-P	Field mustard	nucleus	30.28	33.78
Bra025589.1-P	Field mustard	nucleus	34.26	33.73
Bra024526.1-P	Field mustard	nucleus	35.86	33.46
Bra010736.1-P	Field mustard	nucleus	37.45	33.22
Bra017685.1-P	Field mustard	nucleus	35.86	33.21
Bra039065.1-P	Field mustard	nucleus	25.9	32.66
Bra012337.1-P	Field mustard	nucleus	35.06	31.88
Bra011576.1-P	Field mustard	nucleus	36.26	31.71
Bra033572.1-P	Field mustard	nucleus	37.05	31.63
Bra013055.1-P	Field mustard	nucleus	35.46	30.9
Bra035532.1-P	Field mustard	nucleus	31.87	30.77
Bra037419.1-P	Field mustard	nucleus	35.06	25.66
Bra036145.1-P	Field mustard	nucleus	34.66	25.07
Bra000453.1-P	Field mustard	nucleus	36.26	24.2
Bra004456.1-P	Field mustard	nucleus	27.49	18.9

Protein Annotations

EnsemblPlants:Bra039395.1	EnsemblPlants:Bra039395.1-P	EnsemblPlantsGene:Bra039395	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
ncoils:Coil	PANTHER:PTHR10641	PANTHER:PTHR10641:SF740	PFAM:PF00249	PFscan:PS51294	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000253E948	UniProt:M4FE74	MapMan:15.5.2.1	:	:

Description

AT3G13540 (E=2e-110) ATMYB5 | ATMYB5 (MYB DOMAIN PROTEIN 5); DNA binding / transcription factor

Coordinates

chrScaffold000164:-:265178..266481

Molecular Weight (calculated)

28197.3 Da

IEP (calculated)

7.505

GRAVY (calculated)

-0.718

Length

251 amino acids

Sequence
(BLAST)

001: MTSSGGKKQV VKKMIPCCMK MGMKRGPWTA EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRSSVKRGG ITPDEEDLII RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLSE GIDPQTHKPL DANNAHHKPG EEVSGGQNLL EPNSSSHTDD TTVNSGNEAT KITFSVFGGE DNEDFGFCYD
201: DKFSSFLNAL INDDPFDSNI PLSQPFRTQD CTGEIVGTSS SLEHGQRIED I

Best Arabidopsis Sequence Match ( AT3G13540.1 )
(BLAST)

001: MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW
101: SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY
201: DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD

Arabidopsis Description

MYB5MYB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.