Factsheet for Bra004539.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027653.1-P
Bra027796.1-P
Bra037887.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46410.1	Bra027653.1-P	AT1G63650.1	12917293
AT2G46410.1	Bra027796.1-P	AT1G63650.1	12917293
AT2G46410.1	Bra027653.1-P	AT1G63650.1	14627722
AT2G46410.1	Bra027796.1-P	AT1G63650.1	14627722
AT2G46410.1	Bra027653.1-P	AT1G63650.1	15361138
AT2G46410.1	Bra027796.1-P	AT1G63650.1	15361138
AT2G46410.1	Bra037887.1-P	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80016	Canola	nucleus	100.0	98.84
CDY42045	Canola	nucleus	100.0	98.84
Bra039283.1-P	Field mustard	nucleus	91.76	91.76
AT2G46410.1	Thale cress	nucleus	92.94	84.04
Bra037388.1-P	Field mustard	nucleus	57.65	63.64
Bra000941.1-P	Field mustard	nucleus	56.47	63.16
Bra008539.1-P	Field mustard	cytosol, mitochondrion, nucleus	56.47	62.34
Bra026297.1-P	Field mustard	cytosol, nucleus, peroxisome	38.82	61.11
Bra032635.1-P	Field mustard	cytosol, nucleus, peroxisome	52.94	54.88
Bra022637.1-P	Field mustard	nucleus	42.35	48.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EnsemblPlantsGene:Bra004539	EnsemblPlants:Bra004539.1	EnsemblPlants:Bra004539.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009719	GO:GO:0009751
GO:GO:0009753	GO:GO:0009791	GO:GO:0009913	GO:GO:0009987	GO:GO:0010063	GO:GO:0010376
GO:GO:0030154	InterPro:Homeobox-like_sf	UniProt:M4CK05	PFAM:PF00249	PANTHER:PTHR10641	PANTHER:PTHR10641:SF631
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00025474A9	SEG:seg	:

Description

AT2G46410 (E=3e-039) CPC | CPC (CAPRICE); DNA binding / transcription factor

Coordinates

chrA05:+:706175..706817

Molecular Weight (calculated)

10309.4 Da

IEP (calculated)

10.101

GRAVY (calculated)

-0.959

Length

85 amino acids

Sequence
(BLAST)

1: MDRRRRRHSK AKASCSEEVS SIEWEAVKMS EEEEDLISRM YKLVGDRWEL IAGRIPGRTP EEIERYWLMK HGVVFANKRR EFLRR

Best Arabidopsis Sequence Match ( AT2G46410.1 )
(BLAST)

1: MFRSDKAEKM DKRRRRQSKA KASCSEEVSS IEWEAVKMSE EEEDLISRMY KLVGDRWELI AGRIPGRTPE EIERYWLMKH GVVFANRRRD FFRK

Arabidopsis Description

CPCTranscription factor CPC [Source:UniProtKB/Swiss-Prot;Acc:O22059]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.