Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66317 | Canola | nucleus | 98.82 | 97.67 |
| Bra004539.1-P | Field mustard | nucleus | 91.76 | 91.76 |
| Bra037388.1-P | Field mustard | nucleus | 58.82 | 64.94 |
| Bra000941.1-P | Field mustard | nucleus | 57.65 | 64.47 |
| Bra008539.1-P | Field mustard | cytosol, mitochondrion, nucleus | 57.65 | 63.64 |
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 38.82 | 61.11 |
| Bra032635.1-P | Field mustard | cytosol, nucleus, peroxisome | 52.94 | 54.88 |
| Bra022637.1-P | Field mustard | nucleus | 42.35 | 48.0 |
Protein Annotations
| EnsemblPlants:Bra039283.1 | EnsemblPlants:Bra039283.1-P | EnsemblPlantsGene:Bra039283 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 | PFAM:PF00249 | PFscan:PS50090 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000254462F | UniProt:M4FDW2 | MapMan:15.5.2.2 | : | : |
Description
AT2G46410 (E=9e-039) CPC | CPC (CAPRICE); DNA binding / transcription factor
Coordinates
chrA04:-:18761797..18762573
Molecular Weight (calculated)
10281.4 Da
IEP (calculated)
10.014
GRAVY (calculated)
-0.958
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MDRRRRKQSK AKASCSEEVS SIEWETVKMS EEEEDLISRM YKLVGDRWEL IAGRIPGRTP EEIERYWLMK HGFVFASKRR EFVRK
1: MFRSDKAEKM DKRRRRQSKA KASCSEEVSS IEWEAVKMSE EEEDLISRMY KLVGDRWELI AGRIPGRTPE EIERYWLMKH GVVFANRRRD FFRK
Arabidopsis Description
CPCTranscription factor CPC [Source:UniProtKB/Swiss-Prot;Acc:O22059]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.