Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g091820.1.1 | Tomato | nucleus | 82.35 | 81.6 |
| PGSC0003DMT400078698 | Potato | nucleus | 35.29 | 54.55 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 21.36 | 34.33 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 23.84 | 32.91 |
| CDY13737 | Canola | nucleus | 28.17 | 30.85 |
| AT4G37850.1 | Thale cress | nucleus | 31.27 | 30.79 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 27.55 | 30.17 |
| PGSC0003DMT400033757 | Potato | nucleus | 19.5 | 30.0 |
| CDX89511 | Canola | nucleus | 29.1 | 29.28 |
| AT2G22750.3 | Thale cress | nucleus | 30.03 | 29.13 |
| Bra039924.1-P | Field mustard | nucleus | 28.17 | 29.07 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 20.43 | 28.95 |
| CDY25628 | Canola | nucleus | 28.48 | 28.57 |
| Bra030210.1-P | Field mustard | nucleus | 28.48 | 28.57 |
| KRH42021 | Soybean | nucleus | 17.03 | 28.21 |
| CDY49678 | Canola | nucleus | 29.1 | 28.14 |
| CDY72199 | Canola | nucleus | 29.1 | 28.14 |
| Bra010617.1-P | Field mustard | nucleus | 29.1 | 28.14 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 28.17 | 28.09 |
| CDX75679 | Canola | nucleus | 29.1 | 27.98 |
| Bra011790.1-P | Field mustard | nucleus | 29.1 | 27.98 |
| CDX76899 | Canola | nucleus | 27.86 | 27.86 |
| CDX69336 | Canola | nucleus | 29.1 | 27.81 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 28.48 | 27.54 |
| PGSC0003DMT400013074 | Potato | nucleus | 29.72 | 27.2 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 21.98 | 26.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.01 | 26.09 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 26.32 | 25.99 |
| PGSC0003DMT400078696 | Potato | nucleus | 27.86 | 25.94 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 25.08 | 25.88 |
| KXG37671 | Sorghum | nucleus | 28.48 | 25.84 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 27.24 | 25.81 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 26.01 | 25.3 |
| Os03t0725800-01 | Rice | nucleus | 27.86 | 25.07 |
| Zm00001d033848_P004 | Maize | nucleus | 27.86 | 24.73 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 27.55 | 23.8 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 24.46 | 23.8 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 27.24 | 23.34 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 26.93 | 23.2 |
| Zm00001d013370_P001 | Maize | plastid | 26.63 | 23.06 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 13.62 | 22.34 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 22.6 | 21.41 |
| PGSC0003DMT400014089 | Potato | nucleus | 16.1 | 13.54 |
| PGSC0003DMT400028057 | Potato | nucleus | 15.79 | 13.11 |
| PGSC0003DMT400032140 | Potato | nucleus | 13.0 | 11.67 |
| PGSC0003DMT400033569 | Potato | nucleus | 21.05 | 11.53 |
| PGSC0003DMT400014097 | Potato | nucleus | 16.1 | 11.38 |
| PGSC0003DMT400031899 | Potato | plastid | 14.24 | 10.67 |
| PGSC0003DMT400047220 | Potato | nucleus | 14.86 | 10.62 |
| PGSC0003DMT400015017 | Potato | nucleus | 14.24 | 10.09 |
| PGSC0003DMT400051672 | Potato | nucleus | 14.86 | 10.06 |
| PGSC0003DMT400002963 | Potato | nucleus | 17.96 | 9.7 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 16.1 | 9.0 |
| PGSC0003DMT400045204 | Potato | nucleus | 18.58 | 8.65 |
| PGSC0003DMT400000652 | Potato | nucleus | 15.48 | 8.36 |
| PGSC0003DMT400028054 | Potato | cytosol | 1.86 | 3.05 |
| PGSC0003DMT400028052 | Potato | nucleus | 1.86 | 2.96 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1D0K4 |
| PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400030623 | PGSC:PGSC0003DMG400030623 | EnsemblPlants:PGSC0003DMT400078699 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF48 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002953BEC | InterPro:bHLH_dom | SEG:seg |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030623]
Coordinates
chr2:+:42157677..42159259
Molecular Weight (calculated)
35933.0 Da
IEP (calculated)
5.417
GRAVY (calculated)
-0.453
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MMATFDDFPF NNDLFTSCTF DNIQASQAAA GIFEEKPAFC SSTKAIYQNN TTFSSPPSSS PSVISFSNSN SPSATPTTTA QNYFENLNTS VKTEIPSGTT
101: LNFSSSNTSP DSDYDDSKQL FQAMGFGADD ISQTKKMNYS RTPLQAQDHV LAERKRRERL TQYFVTLSTL IPNLKKLDKA SILGDAITYI KQLEEQVKRL
201: DEEANKEPVV AVKRSRLLSN YDNSSTCNEN SNKSVVPDIE VRASDGNVLI RVSCKKQEGI IKEIFSQVEM FHLTITSSSV IPFGYDTTHI TIVAQMDHQL
301: NMTTDNVANK IRLSIMKVIN SHE
101: LNFSSSNTSP DSDYDDSKQL FQAMGFGADD ISQTKKMNYS RTPLQAQDHV LAERKRRERL TQYFVTLSTL IPNLKKLDKA SILGDAITYI KQLEEQVKRL
201: DEEANKEPVV AVKRSRLLSN YDNSSTCNEN SNKSVVPDIE VRASDGNVLI RVSCKKQEGI IKEIFSQVEM FHLTITSSSV IPFGYDTTHI TIVAQMDHQL
301: NMTTDNVANK IRLSIMKVIN SHE
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.