Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75679 | Canola | nucleus | 93.49 | 94.05 |
| CDY72199 | Canola | nucleus | 81.07 | 82.04 |
| CDY49678 | Canola | nucleus | 79.59 | 80.54 |
| AT4G37850.1 | Thale cress | nucleus | 75.44 | 77.74 |
| CDX89511 | Canola | nucleus | 57.69 | 60.75 |
| CDY25628 | Canola | nucleus | 57.4 | 60.25 |
| CDY13737 | Canola | nucleus | 52.37 | 60.0 |
| CDX76899 | Canola | nucleus | 55.62 | 58.2 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 26.63 | 44.78 |
| CDX89627 | Canola | nucleus | 30.77 | 38.95 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 26.92 | 38.89 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 30.18 | 38.35 |
| CDX93135 | Canola | nucleus | 30.18 | 38.2 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 33.14 | 37.97 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 36.09 | 36.75 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 34.32 | 35.8 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 35.21 | 35.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.43 | 35.09 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 23.37 | 34.65 |
| PGSC0003DMT400033757 | Potato | nucleus | 21.3 | 34.29 |
| CDY13735 | Canola | nucleus | 28.7 | 33.56 |
| KXG37671 | Sorghum | nucleus | 35.21 | 33.43 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 23.08 | 33.33 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 32.25 | 33.33 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 30.77 | 33.23 |
| CDY52591 | Canola | nucleus | 30.77 | 33.02 |
| Os03t0725800-01 | Rice | nucleus | 34.91 | 32.87 |
| CDY52593 | Canola | nucleus | 27.51 | 32.63 |
| CDY25630 | Canola | nucleus | 31.07 | 32.31 |
| CDX89513 | Canola | nucleus | 30.77 | 32.0 |
| Zm00001d033848_P004 | Maize | nucleus | 34.32 | 31.87 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 31.95 | 31.67 |
| CDY25629 | Canola | nucleus | 28.11 | 31.67 |
| CDX89512 | Canola | nucleus | 27.51 | 31.42 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 34.02 | 30.75 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 34.02 | 30.67 |
| Solyc02g091810.1.1 | Tomato | nucleus | 28.7 | 30.5 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 33.43 | 29.97 |
| Zm00001d013370_P001 | Maize | plastid | 32.84 | 29.76 |
| Solyc02g091820.1.1 | Tomato | nucleus | 28.7 | 29.75 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 17.16 | 29.44 |
| PGSC0003DMT400078698 | Potato | nucleus | 18.05 | 29.19 |
| PGSC0003DMT400078699 | Potato | nucleus | 27.81 | 29.1 |
| KRH42021 | Soybean | nucleus | 16.57 | 28.72 |
| Solyc06g064580.1.1 | Tomato | nucleus | 25.44 | 28.29 |
| Solyc06g064590.1.1 | Tomato | nucleus | 23.37 | 28.11 |
| CDX77696 | Canola | nucleus | 8.88 | 25.0 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 22.49 | 22.89 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 22.78 | 22.58 |
| CDY70013 | Canola | nucleus | 14.79 | 19.84 |
| CDX77699 | Canola | nucleus | 14.2 | 17.71 |
| CDY33482 | Canola | nucleus | 14.2 | 17.71 |
| CDX73261 | Canola | nucleus | 19.53 | 14.9 |
| CDY26910 | Canola | nucleus | 19.53 | 14.9 |
| CDY72121 | Canola | nucleus | 13.02 | 14.29 |
| CDX77688 | Canola | nucleus | 18.93 | 14.16 |
| CDX84081 | Canola | nucleus | 21.3 | 13.61 |
| CDY58502 | Canola | nucleus | 18.05 | 13.59 |
| CDY66312 | Canola | nucleus | 17.16 | 12.66 |
| CDY27319 | Canola | nucleus | 16.57 | 12.64 |
| CDY59973 | Canola | nucleus | 18.64 | 12.38 |
| CDY03185 | Canola | nucleus | 17.16 | 12.26 |
| CDY35183 | Canola | nucleus | 18.34 | 12.23 |
| CDY56874 | Canola | nucleus | 17.46 | 12.02 |
| CDY03183 | Canola | nucleus | 18.05 | 11.98 |
| CDY03195 | Canola | nucleus | 18.93 | 11.74 |
| CDY35179 | Canola | nucleus | 19.23 | 11.57 |
| CDY34468 | Canola | nucleus | 15.38 | 11.53 |
| CDX80023 | Canola | nucleus | 16.57 | 11.5 |
| CDX78808 | Canola | nucleus | 19.53 | 11.4 |
| CDY44507 | Canola | nucleus | 19.53 | 11.26 |
| CDX90021 | Canola | nucleus | 17.75 | 11.11 |
| CDY32242 | Canola | nucleus | 14.79 | 11.09 |
| CDX90525 | Canola | nucleus | 14.2 | 10.53 |
| CDY70506 | Canola | nucleus | 16.27 | 10.3 |
| CDX91907 | Canola | nucleus | 16.27 | 10.11 |
| CDX99505 | Canola | nucleus | 15.09 | 9.79 |
| CDX86891 | Canola | nucleus | 15.09 | 9.79 |
| CDY07214 | Canola | mitochondrion, nucleus | 15.68 | 9.78 |
| CDY39747 | Canola | nucleus | 15.68 | 9.48 |
| CDY51155 | Canola | mitochondrion, nucleus | 15.09 | 9.41 |
| CDY58950 | Canola | nucleus | 15.98 | 9.36 |
| CDY25513 | Canola | nucleus | 15.68 | 9.19 |
| CDY34367 | Canola | nucleus | 15.98 | 9.06 |
| CDY09695 | Canola | nucleus | 13.02 | 9.03 |
| CDY08314 | Canola | nucleus | 15.68 | 8.76 |
| CDX77694 | Canola | nucleus | 3.25 | 4.35 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 2.37 | 4.21 |
| CDY70012 | Canola | nucleus | 3.25 | 4.12 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078BX00 | EnsemblPlants:CDX69336 | ProteinID:CDX69336 |
| ProteinID:CDX69336.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00131181001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC7BD8 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g01170D
Coordinates
chrLK031789:-:4249777..4251062
Molecular Weight (calculated)
38357.9 Da
IEP (calculated)
6.801
GRAVY (calculated)
-0.601
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMFSTRWFS EQELEENSII QEYQINSRVG EIHEAQHDLP HSFSTLMAPT DDPSYDDLIE MKPSKILKTT YIAPKLPPPP SFPLPPNSKT YLHHQPSSRI
101: LSFENASPNG MDHGYAPTYL NSIMNPKAED GEPPNRMNEP INRKGTKRAQ PLYRNQTNAQ DHIMAERKRR EKLTQRFVAL SALVPGLKKM DKASVLGDAL
201: KHIKYLQERV GELEEQKREK RLESVVLVNK SKLILDDNNQ SSSSSCCEDG SSGLELPEIE VRFSDNDVLI KILCEKQKGH VAKIMAEIEK FNFSITNSSV
301: LPFGPTLDIT IIAKKENDFD MTLMDVVKSL RSALSKFL
101: LSFENASPNG MDHGYAPTYL NSIMNPKAED GEPPNRMNEP INRKGTKRAQ PLYRNQTNAQ DHIMAERKRR EKLTQRFVAL SALVPGLKKM DKASVLGDAL
201: KHIKYLQERV GELEEQKREK RLESVVLVNK SKLILDDNNQ SSSSSCCEDG SSGLELPEIE VRFSDNDVLI KILCEKQKGH VAKIMAEIEK FNFSITNSSV
301: LPFGPTLDIT IIAKKENDFD MTLMDVVKSL RSALSKFL
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.