Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017520.1-P | Field mustard | nucleus | 91.16 | 93.17 |
| CDY59973 | Canola | nucleus | 92.93 | 92.93 |
| CDY03185 | Canola | nucleus | 74.07 | 79.7 |
| CDY35183 | Canola | nucleus | 79.37 | 79.68 |
| CDX77694 | Canola | nucleus | 27.9 | 56.13 |
| CDY33482 | Canola | nucleus | 29.47 | 55.35 |
| CDX77699 | Canola | nucleus | 29.27 | 54.98 |
| CDX77696 | Canola | nucleus | 12.77 | 54.17 |
| CDX73261 | Canola | nucleus | 44.2 | 50.79 |
| CDY26910 | Canola | nucleus | 43.81 | 50.34 |
| CDY58502 | Canola | nucleus | 41.06 | 46.55 |
| CDX77688 | Canola | nucleus | 41.26 | 46.46 |
| CDX84081 | Canola | nucleus | 45.38 | 43.67 |
| CDY03195 | Canola | nucleus | 42.04 | 39.27 |
| Solyc08g005050.2.1 | Tomato | nucleus | 34.77 | 38.15 |
| CDY35179 | Canola | nucleus | 41.85 | 37.9 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 48.92 | 37.56 |
| PGSC0003DMT400002963 | Potato | nucleus | 44.01 | 37.46 |
| KRH75613 | Soybean | nucleus | 46.76 | 37.36 |
| CDX78808 | Canola | nucleus | 42.04 | 36.96 |
| CDY44507 | Canola | nucleus | 42.44 | 36.86 |
| KRH74418 | Soybean | nucleus | 46.37 | 36.76 |
| KRH45440 | Soybean | nucleus | 46.76 | 36.39 |
| Solyc08g076930.1.1 | Tomato | nucleus | 46.95 | 34.69 |
| PGSC0003DMT400045204 | Potato | nucleus | 46.95 | 34.44 |
| KRH39540 | Soybean | nucleus | 46.76 | 32.56 |
| CDY27319 | Canola | nucleus | 25.74 | 29.57 |
| CDY66312 | Canola | nucleus | 25.54 | 28.38 |
| CDY70013 | Canola | nucleus | 13.95 | 28.17 |
| CDX80023 | Canola | nucleus | 26.33 | 27.52 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 10.22 | 27.37 |
| CDY56874 | Canola | nucleus | 25.93 | 26.88 |
| CDY34468 | Canola | nucleus | 23.77 | 26.83 |
| CDY32242 | Canola | nucleus | 23.58 | 26.61 |
| CDX90525 | Canola | nucleus | 23.58 | 26.32 |
| CDX90021 | Canola | nucleus | 27.11 | 25.56 |
| CDY70012 | Canola | nucleus | 12.38 | 23.6 |
| CDY09695 | Canola | nucleus | 21.61 | 22.59 |
| CDX99505 | Canola | nucleus | 22.2 | 21.69 |
| CDX86891 | Canola | nucleus | 22.2 | 21.69 |
| CDY13737 | Canola | nucleus | 11.2 | 19.32 |
| CDX93135 | Canola | nucleus | 9.82 | 18.73 |
| CDX89627 | Canola | nucleus | 9.82 | 18.73 |
| CDX76899 | Canola | nucleus | 11.79 | 18.58 |
| CDY25513 | Canola | nucleus | 20.63 | 18.2 |
| CDX89511 | Canola | nucleus | 11.39 | 18.07 |
| CDX69336 | Canola | nucleus | 11.98 | 18.05 |
| CDY25628 | Canola | nucleus | 11.39 | 18.01 |
| CDY70506 | Canola | nucleus | 18.66 | 17.79 |
| CDY39747 | Canola | nucleus | 19.45 | 17.71 |
| CDY49678 | Canola | nucleus | 11.59 | 17.66 |
| CDX75679 | Canola | nucleus | 11.59 | 17.56 |
| CDX91907 | Canola | nucleus | 18.66 | 17.46 |
| CDY72199 | Canola | nucleus | 11.39 | 17.37 |
| CDY34367 | Canola | nucleus | 20.24 | 17.28 |
| CDY58950 | Canola | nucleus | 19.25 | 16.98 |
| CDY08314 | Canola | nucleus | 19.65 | 16.53 |
| CDY07214 | Canola | mitochondrion, nucleus | 17.29 | 16.24 |
| CDY51155 | Canola | mitochondrion, nucleus | 17.09 | 16.05 |
| CDY72121 | Canola | nucleus | 9.04 | 14.94 |
| CDY52593 | Canola | nucleus | 8.25 | 14.74 |
| CDX89512 | Canola | nucleus | 8.45 | 14.53 |
| CDY25629 | Canola | nucleus | 8.45 | 14.33 |
| CDY13735 | Canola | nucleus | 8.06 | 14.19 |
| CDY52591 | Canola | nucleus | 8.45 | 13.65 |
| CDX89513 | Canola | nucleus | 8.64 | 13.54 |
| CDY25630 | Canola | nucleus | 8.45 | 13.23 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078EUB9 | EnsemblPlants:CDY03183 | ProteinID:CDY03183 | ProteinID:CDY03183.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00115653001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 |
| PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF43 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE7387 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaC09g19730D
Coordinates
chrLK031941:-:344892..346421
Molecular Weight (calculated)
56418.5 Da
IEP (calculated)
5.275
GRAVY (calculated)
-0.447
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHLNTNVTA SMIEALMNSP SSDSWPPLSP AIPSPDSALQ KRLQAVLNGT HEAWTYAIFW TPSYYDFSGD SVLKWGDGIY KGEEADKTRW RRRKVAENEN
101: RSTILRELSS MISDEALLVM EDEDDVEVSD PSWFYLTSMT VSFGSGFGLP GKAFATYKPV WITGSELILG SGCDRAKTGG EFGLQTIVCI PLDNGVLELG
201: STAEIQQTPD LLNKIRVVFS FEGSRDFSGD PNSNSFPLFS AQLDNGGGSS TVTFSPYPGP FYPQILNSLS QEINFDMLEG NHSGEIHSAN RGAYPGQIQN
301: DDGHIDDFVH SDIEATVVRD NKRKKKRGRK LANGRKEPLN HVQAERLRRE KLNMRFYALR ATVPNVSKMD KASLLGDAIC YINELKSRAE DAESKKNAIQ
401: MELIKLREEI AGRNADSSVC RGGENASENE TANIDVKILG CDAMVRLESS KRNHPAARLM NAFMDLDVEL NHASISVIHD LMIQQATVKM GSRTYTPDQL
501: RAMLVSKIN
101: RSTILRELSS MISDEALLVM EDEDDVEVSD PSWFYLTSMT VSFGSGFGLP GKAFATYKPV WITGSELILG SGCDRAKTGG EFGLQTIVCI PLDNGVLELG
201: STAEIQQTPD LLNKIRVVFS FEGSRDFSGD PNSNSFPLFS AQLDNGGGSS TVTFSPYPGP FYPQILNSLS QEINFDMLEG NHSGEIHSAN RGAYPGQIQN
301: DDGHIDDFVH SDIEATVVRD NKRKKKRGRK LANGRKEPLN HVQAERLRRE KLNMRFYALR ATVPNVSKMD KASLLGDAIC YINELKSRAE DAESKKNAIQ
401: MELIKLREEI AGRNADSSVC RGGENASENE TANIDVKILG CDAMVRLESS KRNHPAARLM NAFMDLDVEL NHASISVIHD LMIQQATVKM GSRTYTPDQL
501: RAMLVSKIN
001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
Arabidopsis Description
BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.