Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22760.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039926.1-P | Field mustard | nucleus | 98.27 | 97.93 |
| CDY52593 | Canola | nucleus | 92.73 | 94.04 |
| CDX89512 | Canola | nucleus | 78.89 | 77.03 |
| CDY25629 | Canola | nucleus | 77.51 | 74.67 |
| AT2G22760.1 | Thale cress | nucleus | 75.09 | 73.56 |
| VIT_07s0205g00170.t01 | Wine grape | cytosol | 19.38 | 44.44 |
| CDX89513 | Canola | nucleus | 45.33 | 40.31 |
| CDY52591 | Canola | nucleus | 43.25 | 39.68 |
| CDY25630 | Canola | nucleus | 43.94 | 39.08 |
| CDY13737 | Canola | nucleus | 31.49 | 30.85 |
| KRH28295 | Soybean | nucleus | 32.18 | 29.71 |
| CDY72199 | Canola | nucleus | 33.91 | 29.34 |
| CDX89511 | Canola | nucleus | 32.53 | 29.28 |
| CDX76899 | Canola | nucleus | 32.53 | 29.1 |
| CDY49678 | Canola | nucleus | 33.56 | 29.04 |
| CDX89627 | Canola | nucleus | 26.64 | 28.84 |
| CDX69336 | Canola | nucleus | 33.56 | 28.7 |
| CDX75679 | Canola | nucleus | 33.22 | 28.57 |
| CDX93135 | Canola | nucleus | 26.3 | 28.46 |
| CDY25628 | Canola | nucleus | 31.49 | 28.26 |
| KRH77195 | Soybean | nucleus | 35.64 | 27.99 |
| KRH28296 | Soybean | nucleus | 32.87 | 27.22 |
| KRH77192 | Soybean | nucleus | 31.14 | 26.39 |
| KRH04348 | Soybean | nucleus | 33.22 | 25.74 |
| KRH58186 | Soybean | nucleus | 31.49 | 25.21 |
| KRH58189 | Soybean | nucleus | 32.87 | 24.87 |
| KRH04346 | Soybean | nucleus | 31.83 | 24.8 |
| CDX77696 | Canola | nucleus | 7.61 | 18.33 |
| CDY33482 | Canola | nucleus | 14.88 | 15.87 |
| CDX77699 | Canola | nucleus | 14.88 | 15.87 |
| CDY70013 | Canola | nucleus | 13.15 | 15.08 |
| CDY72121 | Canola | nucleus | 14.53 | 13.64 |
| CDY58502 | Canola | nucleus | 16.95 | 10.91 |
| CDX77688 | Canola | nucleus | 16.61 | 10.62 |
| CDY26910 | Canola | nucleus | 15.92 | 10.38 |
| CDX73261 | Canola | nucleus | 15.92 | 10.38 |
| CDY27319 | Canola | nucleus | 15.57 | 10.16 |
| CDX84081 | Canola | nucleus | 18.34 | 10.02 |
| CDY34468 | Canola | nucleus | 15.22 | 9.76 |
| CDY66312 | Canola | nucleus | 15.22 | 9.61 |
| CDX80023 | Canola | nucleus | 15.92 | 9.45 |
| CDY56874 | Canola | nucleus | 15.92 | 9.37 |
| CDY32242 | Canola | nucleus | 14.53 | 9.31 |
| CDX99505 | Canola | nucleus | 16.61 | 9.21 |
| CDX86891 | Canola | nucleus | 16.61 | 9.21 |
| CDX90525 | Canola | nucleus | 14.19 | 8.99 |
| CDY03185 | Canola | nucleus | 14.53 | 8.88 |
| CDX78808 | Canola | nucleus | 17.65 | 8.81 |
| CDY03195 | Canola | nucleus | 16.61 | 8.81 |
| CDY35179 | Canola | nucleus | 16.95 | 8.72 |
| CDY44507 | Canola | nucleus | 17.65 | 8.7 |
| CDY35183 | Canola | nucleus | 15.22 | 8.68 |
| CDY58950 | Canola | nucleus | 16.61 | 8.32 |
| CDY39747 | Canola | nucleus | 15.92 | 8.23 |
| CDY09695 | Canola | nucleus | 13.84 | 8.21 |
| CDY59973 | Canola | nucleus | 14.19 | 8.06 |
| CDY03183 | Canola | nucleus | 14.19 | 8.06 |
| CDY25513 | Canola | nucleus | 15.92 | 7.97 |
| CDY08314 | Canola | nucleus | 15.92 | 7.6 |
| CDX90021 | Canola | nucleus | 14.19 | 7.59 |
| CDY34367 | Canola | nucleus | 15.57 | 7.55 |
| CDY70506 | Canola | nucleus | 13.49 | 7.3 |
| CDX91907 | Canola | nucleus | 12.8 | 6.8 |
| CDY07214 | Canola | mitochondrion, nucleus | 12.11 | 6.46 |
| CDY51155 | Canola | mitochondrion, nucleus | 11.76 | 6.27 |
| CDX77694 | Canola | nucleus | 3.11 | 3.56 |
| CDY70012 | Canola | nucleus | 1.73 | 1.87 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 1.04 | 1.58 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078FH35 | UniProt:A0A078FH35 | EnsemblPlants:CDY13735 |
| ProteinID:CDY13735 | ProteinID:CDY13735.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00078166001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE20C0 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaA09g42370DBnaA09g42370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FH35]
Coordinates
chrLK032038:-:39498..40865
Molecular Weight (calculated)
33159.9 Da
IEP (calculated)
6.014
GRAVY (calculated)
-0.348
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEDFFLTDF SLEDIDFDFN IYEETNVSPV EASIHTERAQ FIEHQVPLNY LNEKPKPVVK INNKPRVISF DFSSNVSSSP AREDIIMDQL VTRGTKRKSC
101: SLAKRSPVFA KEHVIAERKR REKLSEKFIA LSALLPGLKK ADKSTVLDDA ISRLKQLQEQ IRKLKEEKET TRHMESMILV KKSKVFLDEG TFLSSSSSSD
201: HEQFDQPLPE IEAKVAQNEV LIRIHCEKSK GSMIDILNTI ENFQLRVENS IVLPFGESIL DITILAQMRK DFLVSALEDF VRNLRLAMV
101: SLAKRSPVFA KEHVIAERKR REKLSEKFIA LSALLPGLKK ADKSTVLDDA ISRLKQLQEQ IRKLKEEKET TRHMESMILV KKSKVFLDEG TFLSSSSSSD
201: HEQFDQPLPE IEAKVAQNEV LIRIHCEKSK GSMIDILNTI ENFQLRVENS IVLPFGESIL DITILAQMRK DFLVSALEDF VRNLRLAMV
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.