Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22760.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039926.1-P | Field mustard | nucleus | 94.39 | 92.76 |
| CDY13735 | Canola | nucleus | 94.04 | 92.73 |
| CDX89512 | Canola | nucleus | 78.95 | 76.01 |
| CDY25629 | Canola | nucleus | 76.49 | 72.67 |
| AT2G22760.1 | Thale cress | nucleus | 74.04 | 71.53 |
| VIT_07s0205g00170.t01 | Wine grape | cytosol | 18.95 | 42.86 |
| CDX89513 | Canola | nucleus | 44.56 | 39.08 |
| CDY52591 | Canola | nucleus | 43.16 | 39.05 |
| CDY25630 | Canola | nucleus | 43.16 | 37.85 |
| CDY13737 | Canola | nucleus | 30.53 | 29.49 |
| KRH28295 | Soybean | nucleus | 32.28 | 29.39 |
| CDY72199 | Canola | nucleus | 32.98 | 28.14 |
| CDX89627 | Canola | nucleus | 26.32 | 28.09 |
| CDX89511 | Canola | nucleus | 31.58 | 28.04 |
| CDX76899 | Canola | nucleus | 31.58 | 27.86 |
| CDY49678 | Canola | nucleus | 32.63 | 27.84 |
| CDX93135 | Canola | nucleus | 25.96 | 27.72 |
| CDX69336 | Canola | nucleus | 32.63 | 27.51 |
| CDX75679 | Canola | nucleus | 32.28 | 27.38 |
| KRH77195 | Soybean | nucleus | 35.09 | 27.17 |
| CDY25628 | Canola | nucleus | 30.53 | 27.02 |
| KRH28296 | Soybean | nucleus | 32.63 | 26.65 |
| KRH77192 | Soybean | nucleus | 30.88 | 25.81 |
| KRH04348 | Soybean | nucleus | 32.98 | 25.2 |
| KRH58186 | Soybean | nucleus | 31.23 | 24.65 |
| KRH58189 | Soybean | nucleus | 32.28 | 24.08 |
| KRH04346 | Soybean | nucleus | 30.88 | 23.72 |
| CDX77696 | Canola | nucleus | 8.07 | 19.17 |
| CDY33482 | Canola | nucleus | 15.79 | 16.61 |
| CDX77699 | Canola | nucleus | 15.79 | 16.61 |
| CDY70013 | Canola | nucleus | 11.93 | 13.49 |
| CDY72121 | Canola | nucleus | 14.04 | 12.99 |
| CDY58502 | Canola | nucleus | 16.84 | 10.69 |
| CDX77688 | Canola | nucleus | 16.49 | 10.4 |
| CDX73261 | Canola | nucleus | 15.79 | 10.16 |
| CDY26910 | Canola | nucleus | 15.79 | 10.16 |
| CDX84081 | Canola | nucleus | 17.89 | 9.64 |
| CDY34468 | Canola | nucleus | 15.09 | 9.53 |
| CDY27319 | Canola | nucleus | 14.74 | 9.48 |
| CDX86891 | Canola | nucleus | 16.84 | 9.21 |
| CDX99505 | Canola | nucleus | 16.84 | 9.21 |
| CDY32242 | Canola | nucleus | 14.39 | 9.09 |
| CDY03185 | Canola | nucleus | 15.09 | 9.09 |
| CDY66312 | Canola | nucleus | 14.39 | 8.95 |
| CDY35183 | Canola | nucleus | 15.79 | 8.88 |
| CDX80023 | Canola | nucleus | 15.09 | 8.83 |
| CDX90525 | Canola | nucleus | 14.04 | 8.77 |
| CDY56874 | Canola | nucleus | 15.09 | 8.76 |
| CDX78808 | Canola | nucleus | 17.54 | 8.64 |
| CDY03195 | Canola | nucleus | 16.49 | 8.62 |
| CDY35179 | Canola | nucleus | 16.84 | 8.54 |
| CDY44507 | Canola | nucleus | 17.54 | 8.53 |
| CDY03183 | Canola | nucleus | 14.74 | 8.25 |
| CDY59973 | Canola | nucleus | 14.74 | 8.25 |
| CDY09695 | Canola | nucleus | 13.68 | 8.01 |
| CDY58950 | Canola | nucleus | 16.14 | 7.97 |
| CDY39747 | Canola | nucleus | 15.44 | 7.87 |
| CDY25513 | Canola | nucleus | 15.79 | 7.8 |
| CDY34367 | Canola | nucleus | 15.44 | 7.38 |
| CDY08314 | Canola | nucleus | 15.44 | 7.27 |
| CDX90021 | Canola | nucleus | 13.33 | 7.04 |
| CDY70506 | Canola | nucleus | 12.63 | 6.74 |
| CDX91907 | Canola | nucleus | 12.28 | 6.43 |
| CDY07214 | Canola | mitochondrion, nucleus | 11.93 | 6.27 |
| CDY51155 | Canola | mitochondrion, nucleus | 11.58 | 6.09 |
| CDX77694 | Canola | nucleus | 3.16 | 3.56 |
| CDY70012 | Canola | nucleus | 1.75 | 1.87 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 1.05 | 1.58 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078IUB3 | UniProt:A0A078IUB3 | EnsemblPlants:CDY52593 |
| ProteinID:CDY52593 | ProteinID:CDY52593.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00007368001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEEED9 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaC08g49180DBnaC08g49180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUB3]
Coordinates
chrLK033106:-:72208..73574
Molecular Weight (calculated)
32732.3 Da
IEP (calculated)
6.531
GRAVY (calculated)
-0.375
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEDFFLTDF SPEDIDFDFN IYEETNVSPV EASIHTERAQ FIEHQVPLNY LNEKPKPVVK INNKPRVIFF YFSSNVSSSP AREDIIMDQL ARRGTKRKSC
101: SPAKRSPVFA KEHVIAERKR REKLSEKFIA LSALLPGLTK ADKITVLDDA ISRLKQLQEQ IRKLKEEKEA TRHMESMILV KKSKVFFDEG TFLSSSSSSD
201: HEQFGQPLPE IEAKVSQNEV LIRIHCEKSK GSMIDILNTI ENFQLRYVLP FGDSILDITI LAQMGKDFSV NALEDFVRNL RLAMV
101: SPAKRSPVFA KEHVIAERKR REKLSEKFIA LSALLPGLTK ADKITVLDDA ISRLKQLQEQ IRKLKEEKEA TRHMESMILV KKSKVFFDEG TFLSSSSSSD
201: HEQFGQPLPE IEAKVSQNEV LIRIHCEKSK GSMIDILNTI ENFQLRYVLP FGDSILDITI LAQMGKDFSV NALEDFVRNL RLAMV
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.