Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70506 | Canola | nucleus | 92.83 | 94.57 |
| CDY07214 | Canola | mitochondrion, nucleus | 79.04 | 79.34 |
| CDY51155 | Canola | mitochondrion, nucleus | 77.94 | 78.23 |
| Bra000970.1-P | Field mustard | nucleus | 91.91 | 76.45 |
| AT4G00480.2 | Thale cress | nucleus | 75.18 | 70.52 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 17.1 | 48.95 |
| GSMUA_Achr11P... | Banana | nucleus | 32.54 | 37.58 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 35.11 | 34.98 |
| GSMUA_Achr11P... | Banana | nucleus | 35.29 | 34.78 |
| CDY39747 | Canola | nucleus | 35.11 | 34.17 |
| CDY58950 | Canola | nucleus | 34.56 | 32.58 |
| GSMUA_Achr11P... | Banana | nucleus | 35.11 | 32.21 |
| CDY25513 | Canola | nucleus | 33.64 | 31.72 |
| CDY34367 | Canola | nucleus | 34.01 | 31.04 |
| CDY08314 | Canola | nucleus | 34.38 | 30.91 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 31.8 | 29.42 |
| CDY72121 | Canola | nucleus | 15.81 | 27.92 |
| CDX86891 | Canola | nucleus | 26.29 | 27.45 |
| CDX99505 | Canola | nucleus | 26.29 | 27.45 |
| CDX77694 | Canola | nucleus | 11.95 | 25.69 |
| CDY70012 | Canola | nucleus | 10.11 | 20.6 |
| CDX77696 | Canola | nucleus | 4.41 | 20.0 |
| CDY03185 | Canola | nucleus | 16.91 | 19.45 |
| CDY66312 | Canola | nucleus | 16.36 | 19.43 |
| CDX77688 | Canola | nucleus | 15.99 | 19.25 |
| CDY58502 | Canola | nucleus | 15.81 | 19.15 |
| CDY27319 | Canola | nucleus | 15.44 | 18.96 |
| CDY03183 | Canola | nucleus | 17.46 | 18.66 |
| CDY59973 | Canola | nucleus | 17.46 | 18.66 |
| CDY35183 | Canola | nucleus | 17.1 | 18.34 |
| CDY56874 | Canola | nucleus | 16.54 | 18.33 |
| CDX80023 | Canola | nucleus | 16.36 | 18.28 |
| CDY34468 | Canola | nucleus | 14.89 | 17.96 |
| CDY32242 | Canola | nucleus | 14.89 | 17.96 |
| CDX73261 | Canola | nucleus | 14.52 | 17.83 |
| CDY26910 | Canola | nucleus | 14.52 | 17.83 |
| CDX90525 | Canola | nucleus | 14.71 | 17.54 |
| CDX77699 | Canola | nucleus | 8.27 | 16.61 |
| CDY03195 | Canola | nucleus | 16.54 | 16.51 |
| CDX69336 | Canola | nucleus | 10.11 | 16.27 |
| CDY35179 | Canola | nucleus | 16.73 | 16.19 |
| CDX75679 | Canola | nucleus | 9.93 | 16.07 |
| CDX78808 | Canola | nucleus | 17.1 | 16.06 |
| CDX90021 | Canola | nucleus | 15.81 | 15.93 |
| CDY44507 | Canola | nucleus | 17.1 | 15.87 |
| CDY49678 | Canola | nucleus | 9.74 | 15.87 |
| CDY72199 | Canola | nucleus | 9.74 | 15.87 |
| CDY33482 | Canola | nucleus | 7.9 | 15.87 |
| CDX84081 | Canola | nucleus | 14.71 | 15.12 |
| CDY09695 | Canola | nucleus | 13.24 | 14.78 |
| CDX93135 | Canola | nucleus | 7.17 | 14.61 |
| CDX89627 | Canola | nucleus | 7.17 | 14.61 |
| CDX76899 | Canola | nucleus | 8.46 | 14.24 |
| CDY13737 | Canola | nucleus | 7.54 | 13.9 |
| CDX89511 | Canola | nucleus | 7.72 | 13.08 |
| CDY25628 | Canola | nucleus | 7.72 | 13.04 |
| CDX89512 | Canola | nucleus | 6.99 | 12.84 |
| CDY13735 | Canola | nucleus | 6.8 | 12.8 |
| CDY52593 | Canola | nucleus | 6.43 | 12.28 |
| CDY25629 | Canola | nucleus | 6.43 | 11.67 |
| CDY70013 | Canola | nucleus | 5.33 | 11.51 |
| CDY52591 | Canola | nucleus | 6.43 | 11.11 |
| CDX89513 | Canola | nucleus | 6.62 | 11.08 |
| CDY25630 | Canola | nucleus | 6.43 | 10.77 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078DSN7 | EnsemblPlants:CDX91907 | ProteinID:CDX91907 | ProteinID:CDX91907.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00153534001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF14215 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF38 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEB1E4 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g32090D
Coordinates
chrLK031870:+:725845..729463
Molecular Weight (calculated)
61941.8 Da
IEP (calculated)
8.201
GRAVY (calculated)
-0.518
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDGVEAPR GRSRRRNSLL SKQLAVAVKS VQWSYAIFWS SSPTQSGVLE WGEGCYNGEM KKRKKRYEVH YKHVLQRSNQ LRKLYLCMRE GDSTNTISTT
101: HDDGYHNCNN TTSMLLSPDD LSDEEWYYVV SMSYVFSPSQ CLPGRALATG ETIWLCNAQY ADSKLFSRSL LARSASIQTV VCFPYLGGVI ELGVTELISE
201: DPSLLQHIKS CLLETSKPDC PSNNFSAHQY NADDDKKNQM KIKIKNPQIQ FGISDLMLDE DLHYKRTVST LLKYAADKSK MKNSHHRQPE LVSSNSGSSF
301: LRWKQPSSNL LLKHSNSQNV LRKILHDVPL MHSVDTKRLS TNKMFGLNQD DPSVKRKENE KFSVLRAMVP TVNEVDKEEI LNNTIKYLQE LEERVEELES
401: CMGSVNFVGK QRKTKKSLND SVLIEETSGN YDDSTKIDGN SGETEQAVTV LRDETHFRVK LKETEVVMEV RCSYRDYIVA DIMETLSKLH MDAFSVRSHT
501: LNGFLTLNLK AKLREAAVAS VGMIKRELRR VIVNGFTCIT PVFF
101: HDDGYHNCNN TTSMLLSPDD LSDEEWYYVV SMSYVFSPSQ CLPGRALATG ETIWLCNAQY ADSKLFSRSL LARSASIQTV VCFPYLGGVI ELGVTELISE
201: DPSLLQHIKS CLLETSKPDC PSNNFSAHQY NADDDKKNQM KIKIKNPQIQ FGISDLMLDE DLHYKRTVST LLKYAADKSK MKNSHHRQPE LVSSNSGSSF
301: LRWKQPSSNL LLKHSNSQNV LRKILHDVPL MHSVDTKRLS TNKMFGLNQD DPSVKRKENE KFSVLRAMVP TVNEVDKEEI LNNTIKYLQE LEERVEELES
401: CMGSVNFVGK QRKTKKSLND SVLIEETSGN YDDSTKIDGN SGETEQAVTV LRDETHFRVK LKETEVVMEV RCSYRDYIVA DIMETLSKLH MDAFSVRSHT
501: LNGFLTLNLK AKLREAAVAS VGMIKRELRR VIVNGFTCIT PVFF
001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF
Arabidopsis Description
ATMYC1Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JHC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.