Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017520.1-P | Field mustard | nucleus | 95.87 | 97.99 |
| CDY03183 | Canola | nucleus | 92.93 | 92.93 |
| CDY03185 | Canola | nucleus | 75.44 | 81.18 |
| CDY35183 | Canola | nucleus | 80.75 | 81.07 |
| CDX77694 | Canola | nucleus | 28.88 | 58.1 |
| CDY33482 | Canola | nucleus | 29.47 | 55.35 |
| CDX77696 | Canola | nucleus | 12.97 | 55.0 |
| CDX77699 | Canola | nucleus | 29.27 | 54.98 |
| CDX73261 | Canola | nucleus | 45.19 | 51.92 |
| CDY26910 | Canola | nucleus | 44.79 | 51.47 |
| CDY58502 | Canola | nucleus | 41.06 | 46.55 |
| CDX77688 | Canola | nucleus | 41.26 | 46.46 |
| CDX84081 | Canola | nucleus | 45.97 | 44.23 |
| CDY03195 | Canola | nucleus | 42.24 | 39.45 |
| Solyc08g005050.2.1 | Tomato | nucleus | 35.56 | 39.01 |
| CDX78808 | Canola | nucleus | 43.42 | 38.17 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 49.71 | 38.16 |
| KRH75613 | Soybean | nucleus | 47.74 | 38.15 |
| PGSC0003DMT400002963 | Potato | nucleus | 44.79 | 38.13 |
| CDY35179 | Canola | nucleus | 42.04 | 38.08 |
| CDY44507 | Canola | nucleus | 43.42 | 37.71 |
| KRH74418 | Soybean | nucleus | 46.95 | 37.23 |
| KRH45440 | Soybean | nucleus | 47.35 | 36.85 |
| Solyc08g076930.1.1 | Tomato | nucleus | 47.74 | 35.27 |
| PGSC0003DMT400045204 | Potato | nucleus | 47.74 | 35.01 |
| KRH39540 | Soybean | nucleus | 47.35 | 32.97 |
| CDY27319 | Canola | nucleus | 25.74 | 29.57 |
| CDY70013 | Canola | nucleus | 13.95 | 28.17 |
| CDY66312 | Canola | nucleus | 25.34 | 28.17 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 10.41 | 27.89 |
| CDX80023 | Canola | nucleus | 26.33 | 27.52 |
| CDY56874 | Canola | nucleus | 25.93 | 26.88 |
| CDY34468 | Canola | nucleus | 23.58 | 26.61 |
| CDY32242 | Canola | nucleus | 23.38 | 26.39 |
| CDX90525 | Canola | nucleus | 23.38 | 26.1 |
| CDX90021 | Canola | nucleus | 27.31 | 25.74 |
| CDY70012 | Canola | nucleus | 12.38 | 23.6 |
| CDY09695 | Canola | nucleus | 21.41 | 22.38 |
| CDX86891 | Canola | nucleus | 22.4 | 21.88 |
| CDX99505 | Canola | nucleus | 22.4 | 21.88 |
| CDY13737 | Canola | nucleus | 11.0 | 18.98 |
| CDX89627 | Canola | nucleus | 9.82 | 18.73 |
| CDX93135 | Canola | nucleus | 9.82 | 18.73 |
| CDX69336 | Canola | nucleus | 12.38 | 18.64 |
| CDY25513 | Canola | nucleus | 21.02 | 18.54 |
| CDX76899 | Canola | nucleus | 11.59 | 18.27 |
| CDY49678 | Canola | nucleus | 11.98 | 18.26 |
| CDX75679 | Canola | nucleus | 11.98 | 18.15 |
| CDY39747 | Canola | nucleus | 19.84 | 18.07 |
| CDY25628 | Canola | nucleus | 11.39 | 18.01 |
| CDY72199 | Canola | nucleus | 11.79 | 17.96 |
| CDY70506 | Canola | nucleus | 18.66 | 17.79 |
| CDX89511 | Canola | nucleus | 11.2 | 17.76 |
| CDY34367 | Canola | nucleus | 20.63 | 17.62 |
| CDX91907 | Canola | nucleus | 18.66 | 17.46 |
| CDY58950 | Canola | nucleus | 19.45 | 17.16 |
| CDY08314 | Canola | nucleus | 20.04 | 16.86 |
| CDY07214 | Canola | mitochondrion, nucleus | 17.29 | 16.24 |
| CDY51155 | Canola | mitochondrion, nucleus | 17.09 | 16.05 |
| CDY72121 | Canola | nucleus | 9.04 | 14.94 |
| CDY52593 | Canola | nucleus | 8.25 | 14.74 |
| CDX89512 | Canola | nucleus | 8.45 | 14.53 |
| CDY25629 | Canola | nucleus | 8.45 | 14.33 |
| CDY13735 | Canola | nucleus | 8.06 | 14.19 |
| CDY52591 | Canola | nucleus | 8.64 | 13.97 |
| CDX89513 | Canola | nucleus | 8.64 | 13.54 |
| CDY25630 | Canola | nucleus | 8.45 | 13.23 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078J6C3 | UniProt:A0A078J6C3 | EnsemblPlants:CDY59973 | ProteinID:CDY59973 |
| ProteinID:CDY59973.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00027997001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 |
| PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF43 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0004EF336A | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BnaA09g53560DBnaA09g53560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6C3]
Coordinates
chrLK033827:-:18912..20441
Molecular Weight (calculated)
56360.4 Da
IEP (calculated)
5.517
GRAVY (calculated)
-0.499
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHLNTNVTA SMIEALMNSP SSDSWPPLSP ANPSPDSALQ KRLQAVLDGT QEAWTYAIFW MPSYYDFSGD SVLKWGDGIY KGEEADKTRR RRRTVAENEH
101: RSTILRELSS MISDEALLVM GDEDDLEVSD PSWFYLTSMT VSFGSGSGLP GKAFATYKPV WVTGSDHIMG SGCDRAKKGG DLGLQTIVCI PLDNGVLELG
201: STAEIQQTPD LFNKIRVVFS FEGSRDFSGD PNSNSFPLFS TQLDNGGGSS TVTFSPYPGP FYPQILNTLS EEINFNTLEG DHSGEIHTAN RNAYPGQIQN
301: DDGHIDDFVH SDIEATVAPD NKRKKKRGRK LANGRKEPLN HVQAERLRRE KLNMRFYALR ATVPNVSKMD KASLLGDAIC YINELKSRAE NAESKKNAIQ
401: MELNKLREEL AGRNAVSSVC RGEGNASENE TANIDVKILG CDAMVRLESS KRNHPAARLM NAFMDLDVEL NHASISVIHD LMIQQATVKM GSRMYTQDQL
501: RAMLVSKIN
101: RSTILRELSS MISDEALLVM GDEDDLEVSD PSWFYLTSMT VSFGSGSGLP GKAFATYKPV WVTGSDHIMG SGCDRAKKGG DLGLQTIVCI PLDNGVLELG
201: STAEIQQTPD LFNKIRVVFS FEGSRDFSGD PNSNSFPLFS TQLDNGGGSS TVTFSPYPGP FYPQILNTLS EEINFNTLEG DHSGEIHTAN RNAYPGQIQN
301: DDGHIDDFVH SDIEATVAPD NKRKKKRGRK LANGRKEPLN HVQAERLRRE KLNMRFYALR ATVPNVSKMD KASLLGDAIC YINELKSRAE NAESKKNAIQ
401: MELNKLREEL AGRNAVSSVC RGEGNASENE TANIDVKILG CDAMVRLESS KRNHPAARLM NAFMDLDVEL NHASISVIHD LMIQQATVKM GSRMYTQDQL
501: RAMLVSKIN
001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
Arabidopsis Description
BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.