Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72199 | Canola | nucleus | 97.6 | 97.6 |
| Bra010617.1-P | Field mustard | nucleus | 97.01 | 97.01 |
| CDX75679 | Canola | nucleus | 82.93 | 82.44 |
| CDX69336 | Canola | nucleus | 80.54 | 79.59 |
| AT4G37850.1 | Thale cress | nucleus | 75.45 | 76.83 |
| CDX89511 | Canola | nucleus | 58.08 | 60.44 |
| CDY25628 | Canola | nucleus | 56.89 | 59.01 |
| CDY13737 | Canola | nucleus | 50.9 | 57.63 |
| CDX76899 | Canola | nucleus | 54.79 | 56.66 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 28.44 | 47.26 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 27.25 | 38.89 |
| CDX89627 | Canola | nucleus | 29.94 | 37.45 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 32.93 | 37.29 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 29.64 | 37.22 |
| CDX93135 | Canola | nucleus | 29.64 | 37.08 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 36.83 | 36.83 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 36.53 | 36.75 |
| PGSC0003DMT400033757 | Potato | nucleus | 22.75 | 36.19 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 35.03 | 36.11 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 34.43 | 35.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.23 | 34.47 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 23.35 | 34.21 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 23.95 | 34.19 |
| CDY13735 | Canola | nucleus | 29.04 | 33.56 |
| KRH42021 | Soybean | nucleus | 19.16 | 32.82 |
| CDY52593 | Canola | nucleus | 27.84 | 32.63 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 30.24 | 32.27 |
| CDX89512 | Canola | nucleus | 28.14 | 31.76 |
| CDY25629 | Canola | nucleus | 28.44 | 31.67 |
| KXG37671 | Sorghum | nucleus | 33.23 | 31.18 |
| CDY52591 | Canola | nucleus | 29.34 | 31.11 |
| Zm00001d033848_P004 | Maize | nucleus | 33.83 | 31.04 |
| Os03t0725800-01 | Rice | nucleus | 32.93 | 30.64 |
| Solyc02g091810.1.1 | Tomato | nucleus | 28.44 | 29.87 |
| CDY25630 | Canola | nucleus | 29.04 | 29.85 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 30.24 | 29.62 |
| CDX89513 | Canola | nucleus | 28.74 | 29.54 |
| Zm00001d013370_P001 | Maize | plastid | 32.93 | 29.49 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 17.37 | 29.44 |
| Solyc02g091820.1.1 | Tomato | nucleus | 28.44 | 29.14 |
| PGSC0003DMT400078699 | Potato | nucleus | 28.14 | 29.1 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 32.04 | 28.61 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 32.04 | 28.53 |
| PGSC0003DMT400078698 | Potato | nucleus | 17.66 | 28.23 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 31.74 | 28.12 |
| Solyc06g064580.1.1 | Tomato | nucleus | 25.15 | 27.63 |
| Solyc06g064590.1.1 | Tomato | nucleus | 22.75 | 27.05 |
| CDX77696 | Canola | nucleus | 8.68 | 24.17 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 23.35 | 23.49 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 23.05 | 22.58 |
| CDY70013 | Canola | nucleus | 15.27 | 20.24 |
| CDX77699 | Canola | nucleus | 13.77 | 16.97 |
| CDY33482 | Canola | nucleus | 13.77 | 16.97 |
| CDX73261 | Canola | nucleus | 21.26 | 16.03 |
| CDY26910 | Canola | nucleus | 21.26 | 16.03 |
| CDX77688 | Canola | nucleus | 20.06 | 14.82 |
| CDX84081 | Canola | nucleus | 22.75 | 14.37 |
| CDY58502 | Canola | nucleus | 19.16 | 14.25 |
| CDY72121 | Canola | nucleus | 12.87 | 13.96 |
| CDY27319 | Canola | nucleus | 17.07 | 12.87 |
| CDY66312 | Canola | nucleus | 17.37 | 12.66 |
| CDY03195 | Canola | nucleus | 20.06 | 12.29 |
| CDY03185 | Canola | nucleus | 17.37 | 12.26 |
| CDY35179 | Canola | nucleus | 20.36 | 12.1 |
| CDX78808 | Canola | nucleus | 20.96 | 12.09 |
| CDY35183 | Canola | nucleus | 18.26 | 12.03 |
| CDY59973 | Canola | nucleus | 18.26 | 11.98 |
| CDY34468 | Canola | nucleus | 16.17 | 11.97 |
| CDY44507 | Canola | nucleus | 20.96 | 11.95 |
| CDY56874 | Canola | nucleus | 17.37 | 11.81 |
| CDX90021 | Canola | nucleus | 18.86 | 11.67 |
| CDY03183 | Canola | nucleus | 17.66 | 11.59 |
| CDY32242 | Canola | nucleus | 15.57 | 11.53 |
| CDX80023 | Canola | nucleus | 16.77 | 11.5 |
| CDX90525 | Canola | nucleus | 14.97 | 10.96 |
| CDY70506 | Canola | nucleus | 15.87 | 9.93 |
| CDY09695 | Canola | nucleus | 14.37 | 9.86 |
| CDX91907 | Canola | nucleus | 15.87 | 9.74 |
| CDX86891 | Canola | nucleus | 14.97 | 9.6 |
| CDX99505 | Canola | nucleus | 14.97 | 9.6 |
| CDY07214 | Canola | mitochondrion, nucleus | 15.27 | 9.41 |
| CDY58950 | Canola | nucleus | 16.17 | 9.36 |
| CDY25513 | Canola | nucleus | 15.87 | 9.19 |
| CDY51155 | Canola | mitochondrion, nucleus | 14.67 | 9.04 |
| CDY39747 | Canola | nucleus | 14.97 | 8.94 |
| CDY34367 | Canola | nucleus | 15.87 | 8.89 |
| CDY08314 | Canola | nucleus | 15.87 | 8.76 |
| CDY70012 | Canola | nucleus | 3.89 | 4.87 |
| CDX77694 | Canola | nucleus | 3.59 | 4.74 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 2.4 | 4.21 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078IKT0 | UniProt:A0A078IKT0 | EnsemblPlants:CDY49678 |
| ProteinID:CDY49678 | ProteinID:CDY49678.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00093566001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF48 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE3CC1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g61210DBnaC03g61210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKT0]
Coordinates
chrLK032852:-:58611..59924
Molecular Weight (calculated)
38059.7 Da
IEP (calculated)
6.746
GRAVY (calculated)
-0.515
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMFSTRLFS DQELEENGII QQYGMNTIMG EIHEAHHTLS HSFPTRMLTT NDPSYDDLID MKPSKILETT YISPKLQPPL SFPIPPYSKP HFHHQPSSKI
101: LSFENATQNV MDYELSPTYQ NSIFSPEVEA EVPPNWMNGK GAKRAQPLYK SQSNAQDHII AERKRREKLT QRFVALSALV PGLKKMDKAS VLGDAQKHIK
201: YLQEKVGEFE EQKRERRLES MVLVKKSKLI LDDNNQSSSS SCCEDDSSTL DLPEIEVKFS DKDVLIKILC EKQKGHVAKI MAEVEKFHFS ITNSSVLPFG
301: PTLDITIIAK KESDFDMTLM DVVKSLRSAL SKFM
101: LSFENATQNV MDYELSPTYQ NSIFSPEVEA EVPPNWMNGK GAKRAQPLYK SQSNAQDHII AERKRREKLT QRFVALSALV PGLKKMDKAS VLGDAQKHIK
201: YLQEKVGEFE EQKRERRLES MVLVKKSKLI LDDNNQSSSS SCCEDDSSTL DLPEIEVKFS DKDVLIKILC EKQKGHVAKI MAEVEKFHFS ITNSSVLPFG
301: PTLDITIIAK KESDFDMTLM DVVKSLRSAL SKFM
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.