Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033757 | Potato | nucleus | 82.05 | 91.43 |
| Solyc01g106460.2.1 | Tomato | nucleus | 30.77 | 29.63 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 28.63 | 28.63 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 23.5 | 27.36 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 27.35 | 24.06 |
| AT2G22750.3 | Thale cress | nucleus | 34.19 | 24.02 |
| CDX89511 | Canola | nucleus | 32.91 | 23.99 |
| Bra010617.1-P | Field mustard | nucleus | 34.19 | 23.95 |
| CDY49678 | Canola | nucleus | 34.19 | 23.95 |
| CDY72199 | Canola | nucleus | 34.19 | 23.95 |
| CDY13737 | Canola | nucleus | 29.91 | 23.73 |
| Bra011790.1-P | Field mustard | nucleus | 33.33 | 23.21 |
| CDX75679 | Canola | nucleus | 33.33 | 23.21 |
| AT4G37850.1 | Thale cress | nucleus | 32.48 | 23.17 |
| CDX69336 | Canola | nucleus | 33.33 | 23.08 |
| Bra039924.1-P | Field mustard | nucleus | 30.77 | 23.0 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 32.48 | 22.75 |
| CDX76899 | Canola | nucleus | 31.2 | 22.6 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 32.05 | 22.59 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 31.2 | 22.53 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 28.21 | 22.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.77 | 22.36 |
| CDY25628 | Canola | nucleus | 30.34 | 22.05 |
| Bra030210.1-P | Field mustard | nucleus | 29.91 | 21.74 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 29.06 | 21.73 |
| KRH42021 | Soybean | nucleus | 17.52 | 21.03 |
| Solyc06g064590.1.1 | Tomato | nucleus | 25.21 | 21.0 |
| Solyc06g064580.1.1 | Tomato | nucleus | 26.5 | 20.39 |
| Solyc02g091820.1.1 | Tomato | nucleus | 28.21 | 20.25 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 28.21 | 20.18 |
| KXG37671 | Sorghum | nucleus | 29.06 | 19.1 |
| Solyc02g091800.2.1 | Tomato | nucleus | 28.21 | 19.02 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 18.38 | 18.86 |
| Zm00001d033848_P004 | Maize | nucleus | 28.63 | 18.41 |
| Os03t0725800-01 | Rice | nucleus | 28.21 | 18.38 |
| Solyc02g091810.1.1 | Tomato | nucleus | 24.79 | 18.24 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 26.5 | 18.18 |
| Zm00001d013370_P001 | Maize | plastid | 27.78 | 17.43 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 26.92 | 16.84 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 23.5 | 16.57 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 26.5 | 16.53 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 26.5 | 16.45 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 23.5 | 16.13 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 13.25 | 15.74 |
| Solyc08g083170.1.1 | Tomato | extracellular | 19.23 | 11.63 |
| Solyc10g009270.2.1 | Tomato | nucleus | 18.8 | 11.2 |
| Solyc10g009290.1.1 | Tomato | nucleus | 20.94 | 10.86 |
| Solyc08g008600.2.1 | Tomato | nucleus | 20.51 | 10.62 |
| Solyc01g096370.2.1 | Tomato | nucleus | 17.52 | 9.11 |
| Solyc06g083980.1.1 | Tomato | nucleus | 17.52 | 8.6 |
| Solyc01g096050.2.1 | Tomato | nucleus | 18.38 | 7.11 |
| Solyc05g050560.1.1 | Tomato | nucleus | 16.67 | 6.74 |
| Solyc08g076930.1.1 | Tomato | nucleus | 19.66 | 6.68 |
| Solyc08g081140.2.1 | Tomato | nucleus | 17.09 | 6.39 |
| Solyc09g065100.1.1 | Tomato | nucleus | 18.38 | 6.32 |
| Solyc08g005050.2.1 | Tomato | nucleus | 11.54 | 5.82 |
Protein Annotations
| EnsemblPlants:Solyc05g009640.2.1 | EnsemblPlantsGene:Solyc05g009640.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF48 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0002766C53 | UniProt:K4BXD8 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr5:+:3847068..3849452
Molecular Weight (calculated)
26589.1 Da
IEP (calculated)
8.271
GRAVY (calculated)
-0.404
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLALIFSH HNNGESSRKQ LHKEKEDEKA NSLACIISFN NNFENSLSIP KDEANNTISF SNINNIIGAK FGERRSGEQA LEHLLAERKR RKRISKLFVS
101: LASLIPGLNK MDKASILEGA ATLIRQLGER AKEDDHHQST IGMMTKNNLL PEVEIKSLEK ELLITILLYK NQQKRNIDEI LSVIQRLHLT IKTTNFMPFG
201: TTSMHITVIA QMNDEFCETT DFLAEKLRSL ISKV
101: LASLIPGLNK MDKASILEGA ATLIRQLGER AKEDDHHQST IGMMTKNNLL PEVEIKSLEK ELLITILLYK NQQKRNIDEI LSVIQRLHLT IKTTNFMPFG
201: TTSMHITVIA QMNDEFCETT DFLAEKLRSL ISKV
001: MNSLVGDVPQ SLSSLDDTTT CYNLDASCNK SLVEERPSKI LKTTHISPNL HPFSSSNPPP PKHQPSSRIL SFEKTGLHVM NHNSPNLIFS PKDEEIGLPE
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QKNNNFDMKI EDVVKNLSFG
301: LSKLT
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QKNNNFDMKI EDVVKNLSFG
301: LSKLT
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.