Factsheet for Solyc01g096050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g042170.2.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	Solyc07g042170.2.1	AT1G19180.1	21798944
AT1G01260.1	Solyc12g009220.1.1	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000652	Potato	nucleus	94.55	95.65
Solyc05g050560.1.1	Tomato	nucleus	69.09	72.19
VIT_15s0046g00320.t01	Wine grape	nucleus	70.74	70.86
KRH68922	Soybean	nucleus	56.36	62.0
KRH47899	Soybean	nucleus	60.66	58.63
KRG97199	Soybean	nucleus	59.01	57.67
KRH06456	Soybean	nucleus	58.84	57.61
GSMUA_Achr10P...	Banana	nucleus	43.14	56.86
AT1G01260.1	Thale cress	nucleus	53.72	55.08
CDY27319	Canola	nucleus	39.83	54.4
GSMUA_Achr8P05350_001	Banana	nucleus	40.33	54.1
CDX90021	Canola	nucleus	48.26	54.07
CDY66312	Canola	nucleus	40.5	53.49
Bra039279.1-P	Field mustard	nucleus	40.17	52.94
Bra033273.1-P	Field mustard	nucleus	51.07	52.91
CDX80023	Canola	nucleus	41.49	51.54
Bra004532.1-P	Field mustard	nucleus	40.99	51.03
AT2G46510.1	Thale cress	nucleus	47.27	50.53
CDY56874	Canola	nucleus	40.99	50.51
GSMUA_Achr8P26280_001	Banana	cytosol	38.35	50.11
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	39.01	49.68
GSMUA_Achr1P28110_001	Banana	nucleus	40.66	49.5
GSMUA_Achr7P14640_001	Banana	nucleus	38.51	48.14
TraesCS4A01G028900.1	Wheat	nucleus	44.96	45.56
TraesCS4B01G276900.1	Wheat	nucleus	44.63	45.15
TraesCS4D01G275500.1	Wheat	nucleus	44.46	44.98
GSMUA_Achr6P35730_001	Banana	nucleus	36.2	44.6
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	42.31	44.52
Zm00001d039271_P001	Maize	nucleus	45.29	44.48
TraesCS3A01G158600.1	Wheat	nucleus	45.12	44.32
EER99993	Sorghum	nucleus	45.12	43.89
Zm00001d009013_P001	Maize	nucleus	44.3	43.86
TraesCS3B01G185400.1	Wheat	nucleus	45.29	43.84
Os01t0235700-01	Rice	nucleus	44.63	43.76
TraesCS3D01G166300.2	Wheat	nucleus	45.12	43.68
EES19274	Sorghum	nucleus	41.32	42.59
Solyc06g083980.1.1	Tomato	nucleus	32.07	40.67
HORVU3Hr1G057280.2	Barley	nucleus	45.62	35.98
Zm00001d007536_P001	Maize	plastid	31.74	31.63
Solyc10g009270.2.1	Tomato	nucleus	20.33	31.3
Solyc10g009290.1.1	Tomato	nucleus	23.14	31.04
Solyc08g083170.1.1	Tomato	extracellular	18.84	29.46
Solyc01g096370.2.1	Tomato	nucleus	21.82	29.33
Solyc08g005050.2.1	Tomato	nucleus	22.15	28.88
Solyc08g008600.2.1	Tomato	nucleus	20.33	27.21
Solyc08g076930.1.1	Tomato	nucleus	30.74	27.0
Solyc01g106460.2.1	Tomato	nucleus	8.26	20.58
Solyc08g081140.2.1	Tomato	nucleus	19.83	19.17
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	7.11	18.38
Solyc09g065100.1.1	Tomato	nucleus	19.01	16.91
Solyc06g064590.1.1	Tomato	nucleus	7.6	16.37
Solyc06g064580.1.1	Tomato	nucleus	8.1	16.12
Solyc02g091820.1.1	Tomato	nucleus	8.43	15.64
Solyc02g091810.1.1	Tomato	nucleus	7.77	14.78
Solyc02g091800.2.1	Tomato	nucleus	7.77	13.54

Protein Annotations

EnsemblPlants:Solyc01g096050.2.1	EnsemblPlantsGene:Solyc01g096050.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
PANTHER:PTHR11514	PANTHER:PTHR11514:SF47	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00027676C1	UniProt:K4AZZ4	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chr1:-:87142496..87144772

Molecular Weight (calculated)

67265.7 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.528

Length

605 amino acids

Sequence
(BLAST)

001: MVTGNMLWSG EDKAMVASVL GKEAFEYLMS GSVSAECSLM AIGNDQNLQN KLSDLVERPN AANFSWNYAI FWQISRSKSG ELVLGWGDGC CREPKEAEER
101: EVKKILNLRL DDEGQQRMRK RVLQKLHMLF GGTDEDNYAF GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FGSGKYLWLS DALTSNLDYC ARSFLAKSAG
201: MQTIALIPTD VGVVELGSVR SIPESLELLQ NIKSCFSSFL SLVRDKQAAG IAAVPEKNEG NNPRLSNSGA VTERTDGNPK IFGHDLNSGT HFREKLAVRK
301: AEERPWDMYQ NGNRMPFVNA RNGLNPASWA QFSNVKLGKP VELYAPPTPG HNLMNGGREE FRLNNFQHQK PAARMQIDFT GATSRTIVSP AHNVESEHSD
401: VEASCKEDRA GPVDEKRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITELQ KKLRDMESER ELRLGSTSRD
501: AITSEDSPSS EIQIRGPDIN IEAANDEVIV RVSCSLETHP LSRIIQIFKE AQINVVESKL SAGNGTVYHT FVIKSSGSEQ LTKEKLLAAF SSESNSLRQL
601: SPVGQ

Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.