Factsheet for PGSC0003DMT400033569

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001513
PGSC0003DMT400015803
PGSC0003DMT400028052
PGSC0003DMT400028054
PGSC0003DMT400033569
PGSC0003DMT400034372
PGSC0003DMT400036281
PGSC0003DMT400036284
PGSC0003DMT400068077
PGSC0003DMT400094468

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	PGSC0003DMT400036281	AT1G56650.1	15361138
AT4G09820.1	PGSC0003DMT400036284	AT1G56650.1	15361138
AT4G09820.1	PGSC0003DMT400036281	AT1G56650.1	18532977
AT4G09820.1	PGSC0003DMT400036284	AT1G56650.1	18532977
AT4G09820.1	PGSC0003DMT400036281	AT1G66370.1	15361138
AT4G09820.1	PGSC0003DMT400036284	AT1G66370.1	15361138
AT4G09820.1	PGSC0003DMT400036281	AT1G66380.1	15361138
AT4G09820.1	PGSC0003DMT400036284	AT1G66380.1	15361138
AT4G09820.1	PGSC0003DMT400036281	AT1G66390.1	15361138
AT4G09820.1	PGSC0003DMT400036284	AT1G66390.1	15361138
AT4G09820.1	PGSC0003DMT400028052	AT4G09820.1	18532977
AT4G09820.1	PGSC0003DMT400028054	AT4G09820.1	18532977
AT4G09820.1	PGSC0003DMT400033569	AT4G09820.1	18532977
AT4G09820.1	PGSC0003DMT400015803	AT4G38620.1	15361138
AT4G09820.1	PGSC0003DMT400034372	AT4G38620.1	15361138
AT4G09820.1	PGSC0003DMT400001513	AT5G24520.1	15255866
AT4G09820.1	PGSC0003DMT400068077	AT5G24520.1	15255866
AT4G09820.1	PGSC0003DMT400094468	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065100.1.1	Tomato	nucleus	91.02	78.97
VIT_07s0104g00090.t01	Wine grape	nucleus	60.0	50.86
KRH71432	Soybean	nucleus	54.92	49.62
KRH32008	Soybean	extracellular, plastid	54.92	48.8
GSMUA_Achr3P17620_001	Banana	nucleus	45.08	47.16
AT4G09820.1	Thale cress	nucleus	40.51	46.14
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	43.9	45.28
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	44.07	44.22
CDX99505	Canola	nucleus	37.46	42.42
CDX86891	Canola	nucleus	37.46	42.42
Bra037887.1-P	Field mustard	nucleus	34.75	41.25
GSMUA_Achr6P21490_001	Banana	nucleus	44.41	40.25
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	36.78	34.66
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	29.15	33.79
OQU88697	Sorghum	nucleus	37.97	33.09
TraesCS1B01G112900.1	Wheat	nucleus	35.08	32.81
Zm00001d019170_P001	Maize	nucleus	36.44	31.9
TraesCS1B01G113100.4	Wheat	nucleus	36.95	31.69
TraesCS1D01G094200.1	Wheat	nucleus	31.86	29.79
PGSC0003DMT400032140	Potato	nucleus	14.24	23.33
PGSC0003DMT400014097	Potato	nucleus	17.63	22.76
PGSC0003DMT400014089	Potato	nucleus	13.9	21.35
PGSC0003DMT400028057	Potato	nucleus	14.07	21.34
PGSC0003DMT400078699	Potato	nucleus	11.53	21.05
PGSC0003DMT400078698	Potato	nucleus	7.46	21.05
PGSC0003DMT400031899	Potato	plastid	14.92	20.42
PGSC0003DMT400047220	Potato	nucleus	15.25	19.91
PGSC0003DMT400033757	Potato	nucleus	6.78	19.05
PGSC0003DMT400013074	Potato	nucleus	11.36	18.98
PGSC0003DMT400015017	Potato	nucleus	14.24	18.42
PGSC0003DMT400051672	Potato	nucleus	14.58	18.03
PGSC0003DMT400002963	Potato	nucleus	18.14	17.89
PGSC0003DMT400028054	Potato	cytosol	5.59	16.75
PGSC0003DMT400000652	Potato	nucleus	16.61	16.39
PGSC0003DMT400028052	Potato	nucleus	5.59	16.26
PGSC0003DMT400018046	Potato	extracellular, nucleus	15.25	15.57
PGSC0003DMT400045204	Potato	nucleus	18.31	15.56
PGSC0003DMT400078696	Potato	nucleus	8.31	14.12

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000976	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009791
GO:GO:0009867	GO:GO:0009987	GO:GO:0010026	GO:GO:0010214	GO:GO:0019748	GO:GO:0030154
GO:GO:0031542	GO:GO:0046983	GO:GO:0048316	GO:GO:2000029	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M1AZC2	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	EnsemblPlantsGene:PGSC0003DMG400012891
PGSC:PGSC0003DMG400012891	EnsemblPlants:PGSC0003DMT400033569	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000296CCD3	InterPro:bHLH_dom	SEG:seg	:	:

Description

Anthocyanin 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012891]

Coordinates

chr9:+:47422301..47429221

Molecular Weight (calculated)

64763.5 Da

IEP (calculated)

6.147

GRAVY (calculated)

-0.366

Length

590 amino acids

Sequence
(BLAST)

001: MEVTAEEASL HRSQQLRELY DSLSAGDSNP PARRPSAALS PEDLTESEWF YLMCVSFSFP PPIGLPGKAY SKKHHIWIMG ANEVDSKVFC RAILAKTVVC
101: IPLLDGVVEL GTTERVQEDI GFIHHVKSFF NEQQQAQPPK PALSEHSTSD PAAFSEPHFY SSNTPSSAVE LDSNGIAIQS VAGAANPIAA EASELMPLDM
201: SETIRLGSPD DGSNNMDTDL YLDGISQAGN TADSFKAETA ISWANFQDLQ HLTGVPSYDE LSQEDAHYSQ TVSAVLEHLS NTSSKFASST TIMGSISPDS
301: AQSAFTLWPI ICSPNPSHCH RQHGGDGSGT SSQWLLKSIL FTVPFLHTTK KLHQLPEALS PKSRDSAADS SAAASRFRKG CTINSSTQQE ETNGNHVLAE
401: RRRREKLNER FIILRSLVPF VTKMDKASIL GDTIEYVKQL RKKVQDLEAR DRHAETTKNA DEKNGTTIVK AFPGKGKRKM KSTVEGSIGR APAKITVSPP
501: MDEEVLQVEV SIIENDALVE LRCPYKEGLL LDVMQMLREL KVEVVAIQSS LNTGFLFAEL RAKVKEDIYG RKASILEVKK SIHQIIPRAN

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.