Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86891 | Canola | nucleus | 79.15 | 78.69 |
| Bra037887.1-P | Field mustard | nucleus | 74.9 | 78.07 |
| CDX99505 | Canola | nucleus | 78.38 | 77.93 |
| KRH71432 | Soybean | nucleus | 56.76 | 45.02 |
| KRH67189 | Soybean | cytosol, mitochondrion, nucleus, plastid | 49.42 | 44.76 |
| GSMUA_Achr3P17620_001 | Banana | nucleus | 48.46 | 44.5 |
| KRG95511 | Soybean | cytosol, mitochondrion, nucleus, plastid | 49.81 | 43.88 |
| KRH32008 | Soybean | extracellular, plastid | 56.18 | 43.83 |
| VIT_07s0104g00090.t01 | Wine grape | nucleus | 58.69 | 43.68 |
| Solyc09g065100.1.1 | Tomato | nucleus | 53.86 | 41.03 |
| PGSC0003DMT400033569 | Potato | nucleus | 46.14 | 40.51 |
| GSMUA_Achr6P21490_001 | Banana | nucleus | 48.46 | 38.56 |
| TraesCS1A01G102400.2 | Wheat | nucleus, vacuole | 43.24 | 35.78 |
| TraesCS1B01G112900.1 | Wheat | nucleus | 41.7 | 34.23 |
| TraesCS1B01G113100.4 | Wheat | nucleus | 43.63 | 32.85 |
| OQU88697 | Sorghum | nucleus | 40.73 | 31.17 |
| Zm00001d019170_P001 | Maize | nucleus | 39.77 | 30.56 |
| HORVU1Hr1G020370.2 | Barley | extracellular, nucleus | 28.76 | 29.27 |
| TraesCS1D01G094200.1 | Wheat | nucleus | 35.33 | 29.0 |
| AT1G63650.1 | Thale cress | nucleus | 32.63 | 28.36 |
| AT5G41315.2 | Thale cress | nucleus | 33.59 | 26.98 |
| PGSC0003DMT400028054 | Potato | cytosol | 9.85 | 25.89 |
| PGSC0003DMT400028052 | Potato | nucleus | 9.85 | 25.12 |
| AT4G00480.2 | Thale cress | nucleus | 27.99 | 25.0 |
| AT4G16430.1 | Thale cress | nucleus | 19.5 | 21.63 |
| AT4G00870.1 | Thale cress | nucleus, plastid | 16.6 | 20.33 |
| AT5G46830.1 | Thale cress | nucleus | 19.3 | 19.57 |
| AT4G17880.1 | Thale cress | nucleus | 21.62 | 19.02 |
| AT1G01260.1 | Thale cress | nucleus | 21.62 | 18.98 |
| AT5G46760.1 | Thale cress | nucleus | 21.24 | 18.58 |
| AT1G32640.1 | Thale cress | nucleus | 22.2 | 18.46 |
| AT2G46510.1 | Thale cress | nucleus | 18.92 | 17.31 |
| AT2G22760.1 | Thale cress | nucleus | 9.27 | 16.27 |
| AT4G37850.1 | Thale cress | nucleus | 10.23 | 16.16 |
| AT2G22750.3 | Thale cress | nucleus | 9.85 | 15.32 |
| AT2G22770.1 | Thale cress | nucleus | 9.27 | 15.0 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:826571 | ProteinID:AEE82802.1 | EMBL:AJ277509 | ArrayExpress:AT4G09820 |
| EnsemblPlantsGene:AT4G09820 | RefSeq:AT4G09820 | TAIR:AT4G09820 | RefSeq:AT4G09820-TAIR-G | EnsemblPlants:AT4G09820.1 | TAIR:AT4G09820.1 |
| Unigene:At.10175 | ProteinID:CAB39649.1 | ProteinID:CAB78105.1 | ncoils:Coil | EMBL:DQ446813 | EMBL:DQ653187 |
| GO:GO:0000003 | GO:GO:0000976 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009791 | GO:GO:0009813 |
| GO:GO:0009867 | GO:GO:0009962 | GO:GO:0009987 | GO:GO:0010026 | GO:GO:0010214 | GO:GO:0019748 |
| GO:GO:0030154 | GO:GO:0031542 | GO:GO:0046983 | GO:GO:0048316 | GO:GO:2000029 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | RefSeq:NP_192720.2 | PFAM:PF00010 | PFAM:PF14215 |
| PO:PO:0000200 | PO:PO:0000293 | PO:PO:0001185 | PO:PO:0009047 | PO:PO:0020100 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF93 | UniProt:Q9FT81 | SMART:SM00353 | SUPFAM:SSF47459 | Symbol:TT8 |
| UniParc:UPI000013777F | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
Coordinates
chr4:+:6181881..6186523
Molecular Weight (calculated)
59201.1 Da
IEP (calculated)
5.679
GRAVY (calculated)
-0.536
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.