Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400028054 | Potato | cytosol | 50.39 | 99.49 |
| PGSC0003DMT400028052 | Potato | nucleus | 51.16 | 98.03 |
| PGSC0003DMT400014089 | Potato | nucleus | 96.4 | 97.66 |
| Solyc10g009270.2.1 | Tomato | nucleus | 88.43 | 87.53 |
| PGSC0003DMT400014097 | Potato | nucleus | 58.35 | 49.67 |
| PGSC0003DMT400047220 | Potato | nucleus | 51.16 | 44.03 |
| KRH06400 | Soybean | nucleus | 46.53 | 38.84 |
| KRH47834 | Soybean | nucleus | 46.02 | 38.58 |
| PGSC0003DMT400031899 | Potato | plastid | 41.65 | 37.59 |
| PGSC0003DMT400015017 | Potato | nucleus | 43.44 | 37.06 |
| HORVU5Hr1G080040.1 | Barley | nucleus | 21.85 | 31.72 |
| TraesCSU01G222600.1 | Wheat | nucleus | 20.05 | 31.71 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 20.05 | 31.71 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 22.62 | 31.54 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 22.11 | 31.27 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 20.57 | 31.25 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 20.57 | 31.25 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 20.57 | 31.25 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 22.36 | 31.18 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 21.85 | 31.02 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 21.08 | 30.94 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 22.11 | 30.82 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 22.11 | 30.82 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 21.59 | 30.77 |
| Zm00001d031717_P001 | Maize | nucleus | 20.05 | 30.71 |
| HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 12.85 | 30.49 |
| HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 16.45 | 30.48 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 21.34 | 30.4 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 21.85 | 30.36 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 15.42 | 30.3 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 21.85 | 30.25 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 21.34 | 30.18 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 21.08 | 30.04 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 18.25 | 29.71 |
| Os08t0543700-00 | Rice | nucleus, peroxisome, plastid | 20.05 | 29.66 |
| OQU80777 | Sorghum | nucleus | 21.34 | 29.64 |
| Os09t0519100-00 | Rice | nucleus | 20.05 | 29.55 |
| OQU75588 | Sorghum | nucleus | 19.54 | 28.9 |
| OQU80776 | Sorghum | nucleus | 19.54 | 28.9 |
| Zm00001d052728_P001 | Maize | nucleus | 20.31 | 28.73 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 16.45 | 28.7 |
| KXG25462 | Sorghum | nucleus | 20.31 | 28.42 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 20.05 | 28.26 |
| HORVU5Hr1G079900.1 | Barley | cytosol | 19.54 | 28.15 |
| OQU86344 | Sorghum | nucleus | 18.51 | 28.12 |
| EER99201 | Sorghum | nucleus | 21.34 | 28.04 |
| Zm00001d006150_P001 | Maize | nucleus | 20.57 | 27.49 |
| OQU80778 | Sorghum | nucleus | 19.02 | 27.41 |
| Zm00001d021164_P001 | Maize | nucleus | 20.05 | 26.9 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 17.99 | 25.09 |
| PGSC0003DMT400051672 | Potato | nucleus | 29.82 | 24.32 |
| PGSC0003DMT400002963 | Potato | nucleus | 37.02 | 24.08 |
| PGSC0003DMT400045204 | Potato | nucleus | 37.53 | 21.04 |
| PGSC0003DMT400000652 | Potato | nucleus | 31.88 | 20.74 |
| HORVU1Hr1G050560.1 | Barley | nucleus | 36.25 | 20.61 |
| PGSC0003DMT400033757 | Potato | nucleus | 11.05 | 20.48 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 36.25 | 20.35 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 36.25 | 20.29 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 30.08 | 20.24 |
| Zm00001d030028_P001 | Maize | nucleus | 36.25 | 20.0 |
| KXG39194 | Sorghum | nucleus | 36.25 | 19.94 |
| Zm00001d047017_P001 | Maize | nucleus | 35.99 | 19.91 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 35.48 | 19.91 |
| Os10t0575000-01 | Rice | nucleus | 35.73 | 19.89 |
| PGSC0003DMT400078698 | Potato | nucleus | 10.54 | 19.62 |
| PGSC0003DMT400078696 | Potato | nucleus | 14.65 | 16.43 |
| PGSC0003DMT400013074 | Potato | nucleus | 14.4 | 15.86 |
| PGSC0003DMT400078699 | Potato | nucleus | 13.11 | 15.79 |
| PGSC0003DMT400033569 | Potato | nucleus | 21.34 | 14.07 |
| PGSC0003DMT400032140 | Potato | nucleus | 10.28 | 11.11 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1AQM5 | InterPro:MYC/MYB_N | PFAM:PF00010 |
| PFAM:PF14215 | EnsemblPlantsGene:PGSC0003DMG401010822 | PGSC:PGSC0003DMG401010822 | EnsemblPlants:PGSC0003DMT400028057 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF40 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000296C26E | InterPro:bHLH_dom | SEG:seg |
Description
MYC1 [Source:PGSC_GENE;Acc:PGSC0003DMG401010822]
Coordinates
chr10:+:4900135..4902878
Molecular Weight (calculated)
44516.7 Da
IEP (calculated)
6.240
GRAVY (calculated)
-0.472
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEPIFSTSS SPSSLQHRLQ YIFKNQTNYY SDWAYAIFWQ SSNNSLSLTW GDGHLNMKTT NNKDVEWFYL MSLAQCFSVG EGVVGKCFSS DSFVWLTGDQ
101: QFEFCHCERA KEAHYVHGIN TFVYIPISSG VLELGSSTVI KQDLNLVQQV KSLFFGYETI GPIDDFGLFN CLEQYGQEAK KGEIVVGTTP QENKVGFKSK
201: TSKKRGRKGR EICETQGNHV EAERQRREKL NSRFYALREV VPNVTKMDKA TLLSDAVTYI TQLKAKVDEL ESKLHNNYYY SVMEKKHKME NDNVVDNQSS
301: TTSWDHTMEI EVKMVGQDAM LRVQSENMNY PSTRLMCALQ EVELHVYHAN ISSVNDLMLH DILVKVPQGL ETEDEVKNAL LRSLKQITC
101: QFEFCHCERA KEAHYVHGIN TFVYIPISSG VLELGSSTVI KQDLNLVQQV KSLFFGYETI GPIDDFGLFN CLEQYGQEAK KGEIVVGTTP QENKVGFKSK
201: TSKKRGRKGR EICETQGNHV EAERQRREKL NSRFYALREV VPNVTKMDKA TLLSDAVTYI TQLKAKVDEL ESKLHNNYYY SVMEKKHKME NDNVVDNQSS
301: TTSWDHTMEI EVKMVGQDAM LRVQSENMNY PSTRLMCALQ EVELHVYHAN ISSVNDLMLH DILVKVPQGL ETEDEVKNAL LRSLKQITC
001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL
Arabidopsis Description
BHLH14Transcription factor bHLH14 [Source:UniProtKB/Swiss-Prot;Acc:O23090]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.