Factsheet for Bra030986.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010178.1-P
Bra022254.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17380.1	Bra010178.1-P	AT1G32640.1	19309455
AT1G17380.1	Bra022254.1-P	AT3G17860.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025977.1-P	Field mustard	nucleus	55.52	64.84
CDX81823	Canola	plastid	52.84	47.59
AT1G17380.1	Thale cress	nucleus	41.47	45.26
Bra016604.1-P	Field mustard	nucleus	39.46	43.7
Bra016056.1-P	Field mustard	nucleus	36.79	40.15
Bra008033.1-P	Field mustard	nucleus	31.1	34.07
Bra003778.1-P	Field mustard	cytosol	20.4	27.48
PGSC0003DMT400011155	Potato	nucleus	18.06	27.0
Bra015880.1-P	Field mustard	cytosol	20.74	25.31
Bra008172.1-P	Field mustard	nucleus	20.07	25.0
Bra025713.1-P	Field mustard	plastid	21.07	24.8
Solyc12g049400.1.1	Tomato	cytosol	16.39	24.5
Bra016520.1-P	Field mustard	plastid	20.4	23.55
KRH47640	Soybean	nucleus	18.06	23.28
VIT_09s0002g00890.t01	Wine grape	nucleus, plastid	22.07	23.08
Bra031065.1-P	Field mustard	plastid	20.74	22.71
KRH06217	Soybean	nucleus, plastid	17.39	22.61
Solyc03g122190.2.1	Tomato	nucleus	21.4	20.71
PGSC0003DMT400058918	Potato	nucleus	21.07	20.39
Bra002338.1-P	Field mustard	cytosol	13.38	19.9
Bra020135.1-P	Field mustard	cytosol	14.05	19.0

Protein Annotations

EnsemblPlants:Bra030986.1	EnsemblPlants:Bra030986.1-P	EnsemblPlantsGene:Bra030986	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom
PANTHER:PTHR33077	PANTHER:PTHR33077:SF5	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	SEG:seg
SMART:SM00979	UniParc:UPI0002542B57	UniProt:M4EQB5	MapMan:15.5.45	:	:

Description

AT1G17380 (E=1e-039) JAZ5, TIFY11A | JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)

Coordinates

chrA09:+:33100525..33101994

Molecular Weight (calculated)

33022.8 Da

IEP (calculated)

9.530

GRAVY (calculated)

-0.962

Length

299 amino acids

Sequence
(BLAST)

001: MSRKENAKAL GPPPEKSSFT RRCSLLSRYL KEKGSFGNIN LDLIRKPDSD LGLPGYSCPP GKQNAMQKAV SETKALDVCQ RDSKAEPSPP SGGKAKDTNL
101: SKPASDSGSS QLTIFFGGQV LVYNEFPADK AKEIMEVAKK AKPVTEVNIQ TQINVENNNT NNIQTQINVE NNNNNKSNMV LPDLNEPTDS MDINPQQQQE
201: NQVVERIARR ASLHRFFAKR KDRAVARAPY QVNQNGGHHH YPPKPETAHG QPLESGQSSK RPENAVAQTM SHPKPVGDKN TSIKIEEEGQ CSKDLELRL

Best Arabidopsis Sequence Match ( AT1G17380.1 )
(BLAST)

001: MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT
101: IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV
201: ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK SDGDKDDIMK IEEGQSSKDL DLRL

Arabidopsis Description

TIFY11AProtein TIFY 11A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.